From 26d2356ad4f8b19ce071ddc09611bbf9ef449954 Mon Sep 17 00:00:00 2001
From: takanori-ihara <62980219+takanori-ihara@users.noreply.github.com>
Date: Mon, 22 Feb 2021 13:06:56 +0900
Subject: genesis: New package. (#21183)

* genesis: New package.

* fujitsu-ssl2: fix unit test error

* genesis: Fix for comments and add test method

* genesis: Fix for comments

* genesis: Fix for comments
---
 .../builtin/packages/genesis/fj_compiler.patch     | 342 +++++++++++++++++++++
 .../packages/genesis/fj_compiler_1.5.1.patch       | 286 +++++++++++++++++
 .../repos/builtin/packages/genesis/package.py      | 112 +++++++
 3 files changed, 740 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/genesis/fj_compiler.patch
 create mode 100644 var/spack/repos/builtin/packages/genesis/fj_compiler_1.5.1.patch
 create mode 100644 var/spack/repos/builtin/packages/genesis/package.py

(limited to 'var')

diff --git a/var/spack/repos/builtin/packages/genesis/fj_compiler.patch b/var/spack/repos/builtin/packages/genesis/fj_compiler.patch
new file mode 100644
index 0000000000..e71fc33855
--- /dev/null
+++ b/var/spack/repos/builtin/packages/genesis/fj_compiler.patch
@@ -0,0 +1,342 @@
+--- a/configure.ac
++++ b/configure.ac
+@@ -124,11 +124,7 @@ AC_PROG_F77($genesis_default_fc)
+ # check actual compiler
+ AC_MSG_CHECKING([for actual compiler])
+ 
+-if test x"${FC}" = x"mpifrtpx"; then
+-  VER_OPT="-V"
+-else
+-  VER_OPT="--version"
+-fi
++VER_OPT="--version"
+ 
+ fc_ver_info=$(${FC} -E ${VER_OPT})
+ for vtok in ${fc_ver_info} ; do
+@@ -158,9 +154,13 @@ for vtok in ${fc_ver_info} ; do
+ done
+ 
+ if test -z "${FC_ACT}"; then
+-  FC_ACT=${FC}
++  FC_ACT=`basename ${FC}`
+ fi
+ 
++
++
++
++
+ AC_MSG_RESULT([$FC_ACT])
+ 
+ version_warning=yes
+@@ -256,7 +256,7 @@ for vtok in ${cc_ver_info} ; do
+ done
+ 
+ if test -z "${CC_ACT}"; then
+-  CC_ACT=${CC}
++  CC_ACT=`basename ${CC}`
+ fi
+ 
+ AC_MSG_RESULT([$CC_ACT])
+@@ -322,18 +322,12 @@ if test x"${enable_openmp}" = x"yes"; th
+   elif test x"${FC_ACT}" = x"pgf90"; then
+     OPT_OPENMP="-mp"
+ 
+-  elif test x"${FC_ACT}" = x"frtpx"; then
++  elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
+     OPT_OPENMP="-Kopenmp"
+   
+-  elif test x"${FC_ACT}" = x"mpifrtpx"; then
++  elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
+     OPT_OPENMP="-Kopenmp"
+   
+-  elif test x"${FC_ACT}" = x"frt"; then
+-    OPT_OPENMP="-KOMP"
+-
+-  elif test x"${FC_ACT}" = x"mpifrt"; then
+-    OPT_OPENMP="-KOMP"
+-
+   fi
+ fi
+ 
+@@ -439,7 +433,8 @@ fi
+ AC_ARG_ENABLE([parallel_IO],
+ 	[AS_HELP_STRING([--enable-parallel_IO], [enable parallel_IO (defalt: no)])],
+ 	[], [enable_parallel_IO=no])
+-if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx"; then
++if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx" -o \
++	x"${FC_ACT}" = x"frt" -o x"${FC_ACT}" = x"mpifrt"; then
+   enable_parallel_IO=no
+ fi
+ #if test x"${mainly_single}" = x"yes"; then
+@@ -742,22 +737,16 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-O2 -fastsse -Mipa=fast,inline -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-m -Kvisimpact -Kocl -Kswp"
+-
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS="-m -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
+-      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -m -Kocl  -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
+-      FCFLAGS_FPP__PGI_NOOPT="-m -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS_PAIRLIST="-m -Kocl  -Kfast,openmp,parallel,simd=2,nounroll,swp_strong,noalias=s -Nlst=t -Koptmsg=2" 
+-      FCFLAGS_DIHEDRAL="-m  -xsp_energy_dihedrals_mod.calculate_dihedral_2 -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS=" -m -Kocl  -Kfast,openmp,parallel,simd=2,swp_strong,noalias=s -Nlst=t -Koptmsg=2"      
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-Kocl"
+ 
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-m -Am -Kfast"
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-m -Am -Kfast"
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS="-Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
++      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP="-Kocl  -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
++      FCFLAGS_FPP__PGI_NOOPT="-Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS_PAIRLIST="-Kocl  -Kfast,openmp,parallel,simd=2,nounroll,swp_strong,noalias=s -Nlst=t -Koptmsg=2" 
++      FCFLAGS_DIHEDRAL="-xsp_energy_dihedrals_mod.calculate_dihedral_2 -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS="-Kocl  -Kfast,openmp,parallel,simd=2,swp_strong,noalias=s -Nlst=t -Koptmsg=2"      
+ 
+     fi
+ 
+@@ -776,22 +765,16 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-m -Kocl "
+-
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS=" -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS=" -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"      
+-      FCFLAGS_KERNELS_PAIRLIST="-m -Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+-      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_FPP__PGI_NOOPT=" -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_DIHEDRAL=" -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"     
+-
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-m "
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-Kocl "
+ 
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-m "
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS=" -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS="-Kocl -Kopenmp  -Nlst=t -Koptmsg=2"      
++      FCFLAGS_KERNELS_PAIRLIST="-Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
++      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP="-Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_FPP__PGI_NOOPT="-Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_DIHEDRAL="-Kocl -Kopenmp  -Nlst=t -Koptmsg=2"     
+ 
+     fi
+ 
+@@ -813,22 +796,16 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-g  -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-g -m -Kocl -Kopenmp"
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-g -Kocl -Kopenmp"
+ 
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"      
+-      FCFLAGS_KERNELS_PAIRLIST=" -g -m -Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+-      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_FPP__PGI_NOOPT=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_DIHEDRAL=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"     
+-
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-g -m "
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-g -m "
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS=" -g  -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"      
++      FCFLAGS_KERNELS_PAIRLIST=" -g  -Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
++      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_FPP__PGI_NOOPT=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_DIHEDRAL=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"     
+ 
+     fi
+ 
+@@ -850,23 +827,23 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-O0 -g -m64 -Msmartalloc=huge"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
+ #      FCFLAGS="-O0 -g -Hs -Hu -Ha"
+       FCFLAGS="-O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+ 
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"      
+-      FCFLAGS_KERNELS_PAIRLIST=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2" 
+-      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -O0 -g -m -Kocl -Kopenmp  -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+-      FCFLAGS_FPP__PGI_NOOPT=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_DIHEDRAL=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha  -Nlst=t -Koptmsg=2"     
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"      
++      FCFLAGS_KERNELS_PAIRLIST=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2" 
++      FCFLAGS_FFTE_KERNEL_FPP__PGI__SP=" -O0 -g -Kocl -Kopenmp  -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
++      FCFLAGS_FPP__PGI_NOOPT=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha  -Nlst=t -Koptmsg=2"
++      FCFLAGS_DIHEDRAL=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha  -Nlst=t -Koptmsg=2"     
+ 
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-O0 -g"
++    #elif test x"${FC_ACT}" = x"frt"; then
++    #  FCFLAGS="-O0 -g"
+ 
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-O0 -g"
++    #elif test x"${FC_ACT}" = x"mpifrt"; then
++    #  FCFLAGS="-O0 -g"
+ 
+     fi
+   else
+@@ -930,17 +907,11 @@ else
+     elif test x"${CC_ACT}" = x"pgcc"; then
+       CFLAGS="-O3 -fastsse -Mipa=fast,inline -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-m -Kvisimpact -Kocl -Kswp"
+-
+-    elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-m -Kvisimpact -Kocl -Kswp"
++    elif test x"${CC_ACT}" = x"fccpx" -o x"${CC_ACT}" = x"fcc"; then
++      CFLAGS="-Kocl"
+ 
+-    elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-m -Am -Kfast"
+-
+-    elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-m -Am -Kfast"
++    elif test x"${CC_ACT}" = x"mpifccpx" -o x"${CC_ACT}" = x"mpifcc"; then
++      CFLAGS="-Kocl"
+ 
+     fi
+ 
+@@ -959,17 +930,11 @@ else
+     elif test x"${CC_ACT}" = x"pgcc"; then
+       CFLAGS="-fastsse -Mipa=fast,inline -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-m -Kocl"
+-
+-    elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-m -Kocl"
+-
+-    elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-m -Am -Kfast"
++    elif test x"${CC_ACT}" = x"fccpx" -o x"${CC_ACT}" = x"fcc"; then
++      CFLAGS="-Kocl"
+ 
+-    elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-m -Am -Kfast"
++    elif test x"${CC_ACT}" = x"mpifccpx" -o x"${CC_ACT}" = x"mpifcc"; then
++      CFLAGS="-Kocl"
+ 
+     fi
+ 
+@@ -991,17 +956,11 @@ else
+     elif test x"${CC_ACT}" = x"pgcc"; then
+       CFLAGS="-g -fastsse -Mipa=fast,inline -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+-    elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-g -m -Kocl"
++    elif test x"${CC_ACT}" = x"fccpx" -o x"${CC_ACT}" = x"fcc"; then
++      CFLAGS="-g -Kocl"
+ 
+-    elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-g -m -Kocl"
+-
+-    elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-g -m -Am -Kfast"
+-
+-    elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-g -m -Am -Kfast"
++    elif test x"${CC_ACT}" = x"mpifccpx" -o x"${CC_ACT}" = x"mpifcc"; then
++      CFLAGS="-g -Kocl"
+ 
+     fi
+ 
+@@ -1023,19 +982,13 @@ else
+     elif test x"${CC_ACT}" = x"pgcc"; then
+       CFLAGS="-O0 -g -m64 -Msmartalloc=huge"
+ 
+-    elif test x"${CC_ACT}" = x"fccpx"; then
++    elif test x"${CC_ACT}" = x"fccpx" -o x"${CC_ACT}" = x"fcc"; then
+ #      CFLAGS="-O0 -g -Hs -Hu -Ha"
+       CFLAGS="-O0 -g -Kocl"
+ 
+-    elif test x"${CC_ACT}" = x"mpifccpx"; then
++    elif test x"${CC_ACT}" = x"mpifccpx" -o x"${CC_ACT}" = x"mpifcc"; then
+       CFLAGS="-O0 -g -Kocl"
+ 
+-    elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-O0 -g"
+-
+-    elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-O0 -g"
+-
+     fi
+ 
+   fi
+@@ -1056,17 +1009,11 @@ if test -z "${LDFLAGS}"; then
+     LDFLAGS=""
+     #LDFLAGS="-march=native -fuse-linker-plugin"
+   
+-  elif test x"${FC_ACT}" = x"frtpx"; then
+-    LDFLAGS="-SSL2 -Kparallel -Nfjomplib"
+-  
+-  elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-    LDFLAGS="-SSL2BLAMP -Kparallel -Nfjomplib"
+-
+-  elif test x"${FC_ACT}" = x"frt"; then
+-    LDFLAGS="-KSPARC64VII,V9FMADD -SSL2"
++  elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++    LDFLAGS="-Kparallel -Kopenmp -Nlibomp"
+   
+-  elif test x"${FC_ACT}" = x"mpifrt"; then
+-    LDFLAGS="-KSPARC64VII,V9FMADD -SSL2"
++  elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++    LDFLAGS="-Kparallel -Kopenmp -Nlibomp"
+ 
+   fi
+ fi
+@@ -1101,7 +1048,9 @@ AC_SUBST(PPFLAGS)
+ 
+ # USEKCOMP
+ AM_CONDITIONAL(USEKCOMP, test x"${FC_ACT}" = x"frtpx" -o \
+-			      x"${FC_ACT}" = x"mpifrtpx")
++			      x"${FC_ACT}" = x"mpifrtpx" -o \
++			      x"${FC_ACT}" = x"frt" -o \
++			      x"${FC_ACT}" = x"mpifrt")
+ 
+ # KCOMP preprocess macro
+ AC_ARG_ENABLE([pktimer],
+@@ -1130,7 +1079,8 @@ AC_ARG_WITH([fj_timer_2],
+ 	[use FJ-timer in main loop (default: not use)])],
+ 	[], [with_fj_timer_2=no])
+ 
+-if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx"; then
++if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx" -o \
++	x"${FC_ACT}" = x"frt" -o x"${FC_ACT}" = x"mpifrt"; then
+   AC_DEFINE(KCOMP, 1, [defined if K-computer compiler is used.])
+   DEFINED_VARIABLES+=" -DKCOMP"
+ 
+@@ -1148,7 +1098,7 @@ if test x"${FC_ACT}" = x"frtpx" -o x"${F
+   mainly_pktimer=no
+   if test x"${enable_pktimer}" = x"yes"; then
+ 
+-    if test x"${FC_ACT}" = x"mpifrtpx"; then
++    if test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
+       AC_DEFINE(PKTIMER, 1, [defined if PKTIMER is used.])
+       DEFINED_VARIABLES+=" -DPKTIMER"
+       mainly_pktimer=yes
diff --git a/var/spack/repos/builtin/packages/genesis/fj_compiler_1.5.1.patch b/var/spack/repos/builtin/packages/genesis/fj_compiler_1.5.1.patch
new file mode 100644
index 0000000000..0bdbd4f58e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/genesis/fj_compiler_1.5.1.patch
@@ -0,0 +1,286 @@
+--- a/configure.ac
++++ b/configure.ac
+@@ -90,11 +90,7 @@ AC_PROG_F77($genesis_default_fc)
+ # check actual compiler
+ AC_MSG_CHECKING([for actual compiler])
+ 
+-if test x"${FC}" = x"mpifrtpx"; then
+-  VER_OPT="-V"
+-else
+-  VER_OPT="--version"
+-fi
++VER_OPT="--version"
+ 
+ fc_ver_info=$(${FC} -E ${VER_OPT})
+ for vtok in ${fc_ver_info} ; do
+@@ -124,7 +120,7 @@ for vtok in ${fc_ver_info} ; do
+ done
+ 
+ if test -z "${FC_ACT}"; then
+-  FC_ACT=${FC}
++  FC_ACT=`basename ${FC}`
+ fi
+ 
+ AC_MSG_RESULT([$FC_ACT])
+@@ -228,7 +224,7 @@ for vtok in ${cc_ver_info} ; do
+ done
+ 
+ if test -z "${CC_ACT}"; then
+-  CC_ACT=${CC}
++  CC_ACT=`basename ${CC}`
+ fi
+ 
+ AC_MSG_RESULT([$CC_ACT])
+@@ -294,18 +290,12 @@ if test x"${enable_openmp}" = x"yes"; th
+   elif test x"${FC_ACT}" = x"pgf90"; then
+     OPT_OPENMP="-mp"
+ 
+-  elif test x"${FC_ACT}" = x"frtpx"; then
++  elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
+     OPT_OPENMP="-Kopenmp"
+   
+-  elif test x"${FC_ACT}" = x"mpifrtpx"; then
++  elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
+     OPT_OPENMP="-Kopenmp"
+   
+-  elif test x"${FC_ACT}" = x"frt"; then
+-    OPT_OPENMP="-KOMP"
+-
+-  elif test x"${FC_ACT}" = x"mpifrt"; then
+-    OPT_OPENMP="-KOMP"
+-
+   fi
+ fi
+ 
+@@ -411,7 +401,8 @@ fi
+ AC_ARG_ENABLE([parallel_IO],
+ 	[AS_HELP_STRING([--enable-parallel_IO], [enable parallel_IO (defalt: yes(intel)/no(fujitsu))])],
+ 	[], [enable_parallel_IO=yes])
+-if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx"; then
++if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx" -o \
++	x"${FC_ACT}" = x"frt" -o x"${FC_ACT}" = x"mpifrt"; then
+   enable_parallel_IO=no
+ fi
+ if test x"${enable_single}" = x"yes"; then
+@@ -639,19 +630,13 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-O2 -fastsse -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge -Mbackslash"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-m -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t  -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND="-m -O3 -Kocl  -Kfsimple,noreduction,fp_contract,fp_relaxed,fz,ilfunc,mfunc,omitfp,simd_packed_promotion,openmp,parallel,simd=2 -Nlst=t -Koptmsg=2" 
+-
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS="-m -Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t  -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND="-m -O3 -Kocl  -Kfsimple,noreduction,fp_contract,fp_relaxed,fz,ilfunc,mfunc,omitfp,simd_packed_promotion,openmp,parallel,simd=2 -Nlst=t -Koptmsg=2" 
+-
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-m -Am -Kfast"
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-m -Am -Kfast"
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t  -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND="-O3 -Kocl  -Kfsimple,noreduction,fp_contract,fp_relaxed,fz,ilfunc,mfunc,omitfp,simd_packed_promotion,openmp,parallel,simd=2 -Nlst=t -Koptmsg=2" 
++
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS="-Kocl -Kfast,openmp,parallel,simd=2,noalias -Nlst=t  -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND="-O3 -Kocl  -Kfsimple,noreduction,fp_contract,fp_relaxed,fz,ilfunc,mfunc,omitfp,simd_packed_promotion,openmp,parallel,simd=2 -Nlst=t -Koptmsg=2" 
+ 
+     fi
+ 
+@@ -670,20 +655,14 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge  -Mbackslash"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-m -Kocl -Kopenmp -Nlst=t  -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND="-m -Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+-
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-Kocl -Kopenmp -Nlst=t  -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND="-Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+ 
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS="-m -Kocl -Kopenmp -Nlst=t  -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND="-m -Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+ 
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-m "
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-m "
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS="-Kocl -Kopenmp -Nlst=t  -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND="-Kocl -Kopenmp -Nlst=t -Koptmsg=2" 
+ 
+     fi
+ 
+@@ -705,19 +684,13 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-g  -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge  -Mbackslash"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS="-g -m -Kocl -Kopenmp"
+-      FCFLAGS_KERNELS_NONBOND=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND=" -g -m -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+-
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-g -m "
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-g -m "
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS="-g -Kocl -Kopenmp"
++      FCFLAGS_KERNELS_NONBOND=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND=" -g -Kocl -Kopenmp  -Nlst=t -Koptmsg=2"
+ 
+     fi
+ 
+@@ -739,18 +712,12 @@ else
+     elif test x"${FC_ACT}" = x"pgf90"; then
+       FCFLAGS="-O0 -g -m64 -Msmartalloc=huge"
+ 
+-    elif test x"${FC_ACT}" = x"frtpx"; then
+-      FCFLAGS=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+-      FCFLAGS_KERNELS_NONBOND=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+-
+-    elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-      FCFLAGS_KERNELS_NONBOND=" -O0 -g -m -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
++    elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++      FCFLAGS=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
++      FCFLAGS_KERNELS_NONBOND=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+ 
+-    elif test x"${FC_ACT}" = x"frt"; then
+-      FCFLAGS="-O0 -g"
+-
+-    elif test x"${FC_ACT}" = x"mpifrt"; then
+-      FCFLAGS="-O0 -g"
++    elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++      FCFLAGS_KERNELS_NONBOND=" -O0 -g -Kocl -Kopenmp -Hs -Hu -Ha -Nlst=t -Koptmsg=2"
+ 
+     fi
+   else
+@@ -804,16 +771,16 @@ else
+       CFLAGS="-O3 -fastsse -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+     elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-m -Kvisimpact -Kocl -Kswp"
++      CFLAGS="-Kvisimpact -Kocl -Kswp"
+ 
+     elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-m -Kvisimpact -Kocl -Kswp"
++      CFLAGS="-Kvisimpact -Kocl -Kswp"
+ 
+     elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-m -Am -Kfast"
++      CFLAGS="-Am -Kfast"
+ 
+     elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-m -Am -Kfast"
++      CFLAGS="-Am -Kfast"
+ 
+     fi
+ 
+@@ -833,16 +800,16 @@ else
+       CFLAGS="-fastsse -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+     elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-m -Kocl"
++      CFLAGS=" -Kocl"
+ 
+     elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-m -Kocl"
++      CFLAGS=" -Kocl"
+ 
+     elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-m -Am -Kfast"
++      CFLAGS=" -Am -Kfast"
+ 
+     elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-m -Am -Kfast"
++      CFLAGS=" -Am -Kfast"
+ 
+     fi
+ 
+@@ -865,16 +832,16 @@ else
+       CFLAGS="-g -fastsse -m64 -Mflushz -pc 64 -mcmodel=medium -Msmartalloc=huge"
+ 
+     elif test x"${CC_ACT}" = x"fccpx"; then
+-      CFLAGS="-g -m -Kocl"
++      CFLAGS="-g  -Kocl"
+ 
+     elif test x"${CC_ACT}" = x"mpifccpx"; then
+-      CFLAGS="-g -m -Kocl"
++      CFLAGS="-g  -Kocl"
+ 
+     elif test x"${CC_ACT}" = x"fcc"; then
+-      CFLAGS="-g -m -Am -Kfast"
++      CFLAGS="-g  -Am -Kfast"
+ 
+     elif test x"${CC_ACT}" = x"mpifcc"; then
+-      CFLAGS="-g -m -Am -Kfast"
++      CFLAGS="-g  -Am -Kfast"
+ 
+     fi
+ 
+@@ -928,17 +895,11 @@ if test -z "${LDFLAGS}"; then
+     LDFLAGS=""
+     #LDFLAGS="-march=native -fuse-linker-plugin"
+   
+-  elif test x"${FC_ACT}" = x"frtpx"; then
+-    LDFLAGS="-SSL2 -Kparallel -Nfjomplib"
+-  
+-  elif test x"${FC_ACT}" = x"mpifrtpx"; then
+-    LDFLAGS="-SSL2BLAMP -Kparallel -Nfjomplib"
+-
+-  elif test x"${FC_ACT}" = x"frt"; then
+-    LDFLAGS="-KSPARC64VII,V9FMADD -SSL2"
++  elif test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"frt"; then
++    LDFLAGS="-Kparallel -Nfjomplib -Nlibomp"
+   
+-  elif test x"${FC_ACT}" = x"mpifrt"; then
+-    LDFLAGS="-KSPARC64VII,V9FMADD -SSL2"
++  elif test x"${FC_ACT}" = x"mpifrtpx" -o x"${FC_ACT}" = x"mpifrt"; then
++    LDFLAGS="-Kparallel -Nfjomplib -Nlibomp"
+ 
+   fi
+ fi
+@@ -973,10 +934,13 @@ AC_SUBST(PPFLAGS)
+ 
+ # USEKCOMP
+ AM_CONDITIONAL(USEKCOMP, test x"${FC_ACT}" = x"frtpx" -o \
+-			      x"${FC_ACT}" = x"mpifrtpx")
++			      x"${FC_ACT}" = x"mpifrtpx" -o \
++			      x"${FC_ACT}" = x"frt" -o \
++			      x"${FC_ACT}" = x"mpifrt")
+ 
+ # KCOMP preprocess macro
+-if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx"; then
++if test x"${FC_ACT}" = x"frtpx" -o x"${FC_ACT}" = x"mpifrtpx" -o \
++	x"${FC_ACT}" = x"frt" -o x"${FC_ACT}" = x"mpifrt"; then
+   AC_DEFINE(KCOMP, 1, [defined if K-computer compiler is used.])
+   DEFINED_VARIABLES+=" -DKCOMP"
+ fi
+@@ -1049,13 +1013,13 @@ if test x"${IS_RICC}" == x"yes"; then
+   if test -n "${RICC_FCFLAGS}"; then
+     FCFLAGS=${RICC_FCFLAGS}
+   else
+-    FCFLAGS="-pc -m -omp"
++    FCFLAGS="-pc -omp"
+   fi
+ 
+   if test -n "${RICC_CFLAGS}"; then
+     CFLAGS=${RICC_CFLAGS}
+   else
+-    CFLAGS="-pc -m -omp"
++    CFLAGS="-pc -omp"
+   fi
+ 
+   if test -n "${RICC_PPFLAGS}"; then
diff --git a/var/spack/repos/builtin/packages/genesis/package.py b/var/spack/repos/builtin/packages/genesis/package.py
new file mode 100644
index 0000000000..3711fa4e9f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/genesis/package.py
@@ -0,0 +1,112 @@
+# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack import *
+
+
+class Genesis(AutotoolsPackage, CudaPackage):
+    """GENESIS is a Molecular dynamics and modeling software
+    for bimolecular systems such as proteins, lipids, glycans,
+    and their complexes.
+    """
+
+    homepage = "https://www.r-ccs.riken.jp/labs/cbrt/"
+    url = "https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2020/09/genesis-1.5.1.tar.bz2"
+    git = "https://github.com/genesis-release-r-ccs/genesis-2.0.git"
+
+    version("master", branch="master")
+    version(
+        "1.5.1",
+        sha256="62a453a573c36779484b4ffed2dfa56ea03dfe1308d631b33ef03f733259b3ac",
+        url="https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2020/09/genesis-1.5.1.tar.bz2",
+    )
+
+    resource(
+        when="@1.5.1",
+        name="user_guide",
+        url="https://www.r-ccs.riken.jp/labs/cbrt/wp-content/uploads/2019/10/GENESIS-1.4.0.pdf",
+        sha256="da2c3f8bfa1e93adb992d3cfce09fb45d8d447a94f9a4f884ac834ea7279b9c7",
+        expand=False,
+        placement="doc",
+    )
+
+    variant("openmp", default=True, description="Enable OpenMP.")
+    variant("single", default=False, description="Enable single precision.")
+    variant("hmdisk", default=False, description="Enable huge molecule on hard disk.")
+
+    conflicts("%apple-clang", when="+openmp")
+
+    depends_on("autoconf", type="build", when="@1.5.1 %fj")
+    depends_on("autoconf", type="build", when="@master")
+    depends_on("automake", type="build", when="@1.5.1 %fj")
+    depends_on("automake", type="build", when="@master")
+    depends_on("libtool", type="build", when="@1.5.1 %fj")
+    depends_on("libtool", type="build", when="@master")
+    depends_on("m4", type="build", when="@1.5.1 %fj")
+    depends_on("m4", type="build", when="@master")
+
+    depends_on("mpi", type=("build", "run"))
+    depends_on("lapack")
+    depends_on("python@2.6.9:2.8.0", type=("build", "run"), when="@master")
+
+    patch("fj_compiler.patch", when="@master %fj")
+    patch("fj_compiler_1.5.1.patch", when="@1.5.1 %fj")
+
+    parallel = False
+
+    @property
+    def force_autoreconf(self):
+        # Run autoreconf due to build system patch
+        return self.spec.satisfies("@1.5.1 %fj")
+
+    def configure_args(self):
+        spec = self.spec
+        options = []
+        options.extend(self.enable_or_disable("openmp"))
+        options.extend(self.enable_or_disable("single"))
+        options.extend(self.enable_or_disable("hmdisk"))
+        if "+cuda" in spec:
+            options.append("--enable-gpu")
+            options.append("--with-cuda=%s" % spec["cuda"].prefix)
+        else:
+            options.append("--disable-gpu")
+        if spec.target == "a64fx" and self.spec.satisfies("@master %fj"):
+            options.append("--host=Fugaku")
+        return options
+
+    def setup_build_environment(self, env):
+        env.set("FC", self.spec["mpi"].mpifc, force=True)
+        env.set("F77", self.spec["mpi"].mpif77, force=True)
+        env.set("CC", self.spec["mpi"].mpicc, force=True)
+        env.set("CXX", self.spec["mpi"].mpicxx, force=True)
+        env.set("LAPACK_LIBS", self.spec["lapack"].libs.ld_flags)
+        if "+cuda" in self.spec:
+            cuda_arch = self.spec.variants["cuda_arch"].value
+            cuda_gencode = " ".join(self.cuda_flags(cuda_arch))
+            env.set("NVCCFLAGS", cuda_gencode)
+
+    def install(self, spec, prefix):
+        make("install")
+        install_tree("doc", prefix.share.doc)
+
+    @run_after("install")
+    def cache_test_sources(self):
+        if self.spec.satisfies("@master"):
+            self.cache_extra_test_sources(["tests"])
+
+    def test(self):
+        if self.spec.satisfies("@master"):
+            exe_name = self.spec["python"].command.path
+            test_name = join_path(
+                self.install_test_root, "tests", "regression_test", "test.py"
+            )
+            bin_name = join_path(self.prefix.bin, "spdyn")
+            opts = [
+                test_name,
+                self.spec["mpi"].prefix.bin.mpirun + " -np 8 " + bin_name,
+            ]
+            env["OMP_NUM_THREADS"] = "1"
+            self.run_test(exe_name, options=opts, expected="Passed  53 / 53")
-- 
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