From 4118a0177439e0a28a92b7ce04a949e12f0eefd9 Mon Sep 17 00:00:00 2001 From: Antonio Arena Date: Thu, 21 May 2020 06:34:03 +0300 Subject: Install gaussian using their scripts (#16723) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Restructure description so first short paragraph can be used by module files. * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * Remove extra spaces. * Use setup_build_environment since that's where you're supposed to export OS variblaes. Thanks to peer-review for spotting this. * Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Add Cubist (#16069) * Add Cubist * enhance recipe * Not using OS module anymore * remove white space * Fix build shell * make Flake8 happy * use bash shell for build * Convert it To MakefilePackage as per peer-review * dbcsr: expose all options, check openblas feats (#16034) * dbcsr: expose all options, check openblas feats * dbcsr: use Ninja to build, ensure serialized tests * dbcsr: add myself as maintainer * MPark.Variant: GCC 7.3.1 Conflict (#16081) * MPark.Variant: GCC 7.3.1 Conflict Due to an ICE in this specific patch-release of GCC, compile errors in downstream packages should be avoided with a clean conflict. * Fix superfluous spaces Co-Authored-By: Adam J. Stewart * Fix typo Co-authored-by: Adam J. Stewart * Move VMD package to correct path, duh... * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * New matlab versions (#16086) * Add new version 1.1.1 (#16087) * New package bonniepp added (#16091) * openbabel: fix compilation errors (#16090) - Disable maeparser as it is broken with CMake - Added missing dependencies * singularity: updated maintainer list (#16093) * New version xrootd-4.11.3 (#16092) * I added Gaussian 16. I also execute bsd/install to fix scripts instead of filtering them. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * I added myself as a package maintainer. Co-authored-by: asmaahassan90 <31959389+asmaahassan90@users.noreply.github.com> Co-authored-by: Tiziano Müller Co-authored-by: Axel Huebl Co-authored-by: Adam J. Stewart Co-authored-by: Harmen Stoppels Co-authored-by: Amjad Kotobi Co-authored-by: athanasio Co-authored-by: Carlos Arango Gutierrez --- .../repos/builtin/packages/gaussian/package.py | 76 ++++++++++++---------- 1 file changed, 42 insertions(+), 34 deletions(-) (limited to 'var') diff --git a/var/spack/repos/builtin/packages/gaussian/package.py b/var/spack/repos/builtin/packages/gaussian/package.py index f32b9b2b38..7a1f7e6821 100644 --- a/var/spack/repos/builtin/packages/gaussian/package.py +++ b/var/spack/repos/builtin/packages/gaussian/package.py @@ -2,50 +2,58 @@ # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) - from spack import * import os class Gaussian(Package): - """Gaussian is a computer program for computational chemistry""" + """Gaussian is a computer program for computational chemistry""" homepage = "http://www.gaussian.com/" - url = "file://{0}/g09.tgz".format(os.getcwd()) manual_download = True - version('09', '7d4c95b535e68e48af183920df427e4e') + maintainers = ['antoniokaust'] + + version('16-B.01', sha256='0b2cf60aa85d2c8c8e7547446e60e8e8cb67eec20e5f13c4a3e4e7616dcdf122') + version('09-D.01', sha256='ef14885b5e334b6ec44a93bfd7225c634247dc946416af3087ab055bf05f54cd') + + @property + def ver(self): + return self.version.string.split('-')[0] + + @property + def g_root(self): + return join_path(self.prefix, 'g' + self.ver) + + @property + def g_bsd(self): + return join_path(self.g_root, 'bsd') + + def url_for_version(self, version): + return "file://{0}/g{1}.tgz".format(os.getcwd(), version) def install(self, spec, prefix): - install_tree('.', prefix.bin) - patch_install_files = ['flc', - 'linda8.2/opteron-linux/bin/flc', - 'linda8.2/opteron-linux/bin/LindaLauncher', - 'linda8.2/opteron-linux/bin/ntsnet', - 'linda8.2/opteron-linux/bin/pmbuild', - 'linda8.2/opteron-linux/bin/vntsnet', - 'ntsnet' - ] - for filename in patch_install_files: - if os.path.isfile(filename): - filter_file('/mf/frisch/g09', prefix.bin, join_path(prefix.bin, - filename), string='True') - patch_install_files = ['linda8.2/opteron-linux/bin/ntsnet', - 'linda8.2/opteron-linux/bin/vntsnet', - ] - for filename in patch_install_files: - if os.path.isfile(filename): - filter_file('/usr/bin/linda', prefix.bin, join_path(prefix.bin, - filename), string='True') + install_tree('.', self.g_root) + + @run_after('install') + def bsd_install(self): + with working_dir(self.g_root): + bsd_install = Executable(join_path('bsd', 'install')) + bsd_install() def setup_run_environment(self, env): - env.set('g09root', self.prefix) - env.set('GAUSSIANHOME', self.prefix) - env.set('GAUSS_EXEDIR', self.prefix.bin) - env.set('G09_BASIS', self.prefix.bin.basis) - env.set('GAUSS_LEXEDIR', join_path(self.prefix.bin, 'linda-exe')) - env.set('GAUSS_ARCHDIR', self.prefix.bin.arch) - env.set('GAUSS_BSDDIR', self.prefix.bin.bsd) - env.prepend_path('LD_LIBRARY_PATH', join_path(self.prefix.bin, - 'linda8.2', 'opteron-linux', 'lib')) - env.prepend_path('LD_LIBRARY_PATH', self.prefix.bin) + env.set('g' + self.ver + 'root', self.prefix) + + env.prepend_path('GAUSS_EXEDIR', self.g_root) + env.prepend_path('GAUSS_EXEDIR', self.g_bsd) + + env.prepend_path('PATH', self.g_root) + env.prepend_path('PATH', self.g_bsd) + + env.set('GAUSS_LEXEDIR', join_path(self.g_root, 'linda-exe')) + env.set('GAUSS_ARCHDIR', join_path(self.g_root, 'arch')) + env.set('GAUSS_BSDDIR', self.g_bsd) + env.set('G' + self.ver + 'BASIS', join_path(self.g_root, 'basis')) + + env.prepend_path('LD_LIBRARY_PATH', self.g_root) + env.prepend_path('LD_LIBRARY_PATH', self.g_bsd) -- cgit v1.2.3-60-g2f50