From 41d2161b5b5a40e1912cd8deb81da331a5a25de9 Mon Sep 17 00:00:00 2001 From: George Young Date: Thu, 3 Aug 2023 00:11:18 +0100 Subject: nextdenovo: new package @2.5.2 (and py-paralleltask) (#39139) * py-paralleltask: new package @0.2.2 * adding hidden dependency * nextdenovo: new package @2.5.2 * style * Update var/spack/repos/builtin/packages/py-paralleltask/package.py Co-authored-by: Adam J. Stewart --------- Co-authored-by: LMS Bioinformatics Co-authored-by: Adam J. Stewart --- .../repos/builtin/packages/nextdenovo/package.py | 29 ++++++++++++++++++++++ .../builtin/packages/py-paralleltask/package.py | 20 +++++++++++++++ 2 files changed, 49 insertions(+) create mode 100644 var/spack/repos/builtin/packages/nextdenovo/package.py create mode 100644 var/spack/repos/builtin/packages/py-paralleltask/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/nextdenovo/package.py b/var/spack/repos/builtin/packages/nextdenovo/package.py new file mode 100644 index 0000000000..51748f0e3a --- /dev/null +++ b/var/spack/repos/builtin/packages/nextdenovo/package.py @@ -0,0 +1,29 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Nextdenovo(MakefilePackage): + """NextDenovo is a string graph-based de novo assembler for long reads.""" + + homepage = "https://nextdenovo.readthedocs.io/en/latest/index.html" + url = "https://github.com/Nextomics/NextDenovo/archive/refs/tags/2.5.2.tar.gz" + + version("2.5.2", sha256="f1d07c9c362d850fd737c41e5b5be9d137b1ef3f1aec369dc73c637790611190") + + depends_on("python", type="run") + depends_on("py-paralleltask", type="run") + + def edit(self, spec, prefix): + makefile = FileFilter("Makefile") + makefile.filter(r"^TOP_DIR.*", "TOP_DIR={0}".format(self.build_directory)) + runfile = FileFilter("nextDenovo") + runfile.filter(r"^SCRIPT_PATH.*", "SCRIPT_PATH = '{0}'".format(prefix)) + + def install(self, spec, prefix): + install_tree("bin", prefix.bin) + install("nextDenovo", prefix.bin) + install_tree("lib", prefix.lib) diff --git a/var/spack/repos/builtin/packages/py-paralleltask/package.py b/var/spack/repos/builtin/packages/py-paralleltask/package.py new file mode 100644 index 0000000000..53ce9066e9 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-paralleltask/package.py @@ -0,0 +1,20 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyParalleltask(PythonPackage): + """Paralleltask is a simple and lightweight parallel task engine. It can launch a given + number of tasks from a batch of independent tasks, and keep this number of running tasks + until all tasks are completed.""" + + homepage = "https://github.com/moold/ParallelTask" + pypi = "Paralleltask/Paralleltask-0.2.2.tar.gz" + + version("0.2.2", sha256="f00945e2bd5b6aff9cdc48fbd92aa7b48d23bb530d7f6643ac966fea11a7a9d5") + + depends_on("py-setuptools", type="build") + depends_on("py-psutil", type=("build", "run")) -- cgit v1.2.3-60-g2f50