From 43a26d08502b90a2fa424fb5755479a4e0512911 Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Mon, 19 Nov 2018 20:41:01 -0600 Subject: r-diversitree: new package (#9893) * r-diversitree: new package * r-diversitree: system reqs --- .../builtin/packages/r-diversitree/package.py | 33 ++++++++++++++++++++++ 1 file changed, 33 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-diversitree/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-diversitree/package.py b/var/spack/repos/builtin/packages/r-diversitree/package.py new file mode 100644 index 0000000000..e6e1746022 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-diversitree/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + + +from spack import * + + +class RDiversitree(RPackage): + """Contains a number of comparative 'phylogenetic' methods. + + Mostly focusing on analysing diversification and character + evolution. Contains implementations of 'BiSSE' (Binary State + 'Speciation' and Extinction) and its unresolved tree extensions, + 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', + 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov + models of discrete and continuous trait evolution and constant + rate 'speciation' and extinction.""" + + homepage = "http://www.zoology.ubc.ca/prog/diversitree" + url = "https://cran.r-project.org/src/contrib/diversitree_0.9-10.tar.gz" + list_url = "https://cron.r-project.org/src/contrib/Archive/diversitree" + + version('0.9-10', sha256='e7df5910c8508a5c2c2d6d3deea53dd3f947bb762196901094c32a7033cb043e') + + depends_on('r@2.1.0:', type=('build', 'run')) + depends_on('r-ape', type=('build', 'run')) + depends_on('r-desolve@1.7:', type=('build', 'run')) + depends_on('r-subplex', type=('build', 'run')) + depends_on('r-rcpp@0.10.0:', type=('build', 'run')) + depends_on('fftw@3.1.2:') + depends_on('gsl@1.15:') -- cgit v1.2.3-70-g09d2