From 4be224238e3ed453df47c975bceb6426e48a885b Mon Sep 17 00:00:00 2001 From: John Finigan Date: Fri, 14 Oct 2016 13:00:56 -0600 Subject: py-macs2: New package (#2011) * py-macs2: New package * py-macs2: add py-numpy@1.6: dependency --- .../repos/builtin/packages/py-macs2/package.py | 46 ++++++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-macs2/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/py-macs2/package.py b/var/spack/repos/builtin/packages/py-macs2/package.py new file mode 100644 index 0000000000..df5b00555f --- /dev/null +++ b/var/spack/repos/builtin/packages/py-macs2/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## + +from spack import * + + +class PyMacs2(Package): + """MACS2 Model-based Analysis of ChIP-Seq""" + + homepage = "https://github.com/taoliu/MACS" + url = "https://pypi.python.org/packages/9f/99/a8ac96b357f6b0a6f559fe0f5a81bcae12b98579551620ce07c5183aee2c/MACS2-2.1.1.20160309.tar.gz" + + version('2.1.1.20160309', '2008ba838f83f34f8e0fddefe2a3a0159f4a740707c68058f815b31ddad53d26') + + extends('python') + depends_on('python@2.7:2.8') + + # Most Python packages only require py-setuptools as a build dependency. + # However, py-macs2 requires py-setuptools during runtime as well. + depends_on('py-setuptools', type=nolink) + depends_on('py-numpy@1.6:', type=nolink) + + def install(self, spec, prefix): + setup_py('install', '--prefix={0}'.format(prefix)) -- cgit v1.2.3-60-g2f50