From 4beb76daf63ea957d552027f57fb0ce2894cd4eb Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Wed, 5 Jul 2017 14:09:01 -0500 Subject: New package bucky (#4677) --- var/spack/repos/builtin/packages/bucky/package.py | 57 +++++++++++++++++++++++ 1 file changed, 57 insertions(+) create mode 100644 var/spack/repos/builtin/packages/bucky/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/bucky/package.py b/var/spack/repos/builtin/packages/bucky/package.py new file mode 100644 index 0000000000..d74e8784e5 --- /dev/null +++ b/var/spack/repos/builtin/packages/bucky/package.py @@ -0,0 +1,57 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Bucky(MakefilePackage): + """BUCKy is a free program to combine molecular data from multiple loci. + BUCKy estimates the dominant history of sampled individuals, and how + much of the genome supports each relationship, using Bayesian + concordance analysis.""" + + homepage = "http://www.stat.wisc.edu/~ane/bucky/index.html" + url = "http://dstats.net/download/http://www.stat.wisc.edu/~ane/bucky/v1.4/bucky-1.4.4.tgz" + + version('1.4.4', 'f0c910dd1d411d112637826519943a6d') + + # Compilation requires gcc + conflicts('%cce') + conflicts('%clang') + conflicts('%intel') + conflicts('%nag') + conflicts('%pgi') + conflicts('%xl') + conflicts('%xl_r') + + build_directory = 'src' + + def install(self, spec, prefix): + with working_dir('src'): + mkdirp(prefix.bin) + install('bucky', prefix.bin) + install('mbsum', prefix.bin) + install_tree('data', prefix.data) + install_tree('doc', prefix.doc) + install_tree('scripts', prefix.scripts) -- cgit v1.2.3-60-g2f50