From 4cd4a2da46070605399b8278d8e5fd6624657d30 Mon Sep 17 00:00:00 2001 From: George Hartzell Date: Wed, 29 Mar 2017 12:25:09 -0700 Subject: Add package for snakemake (#3605) * Add package for snakemake * Flake8 cleanups * Add package for py-wrapt * Address PR feedback Switch to pypi URL. Tighten Python3 dependency spec. Add missing dependencies (wrapt, requests). - add package for wrapt. --- .../repos/builtin/packages/py-wrapt/package.py | 34 +++++++++++++++++++ .../repos/builtin/packages/snakemake/package.py | 39 ++++++++++++++++++++++ 2 files changed, 73 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-wrapt/package.py create mode 100644 var/spack/repos/builtin/packages/snakemake/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/py-wrapt/package.py b/var/spack/repos/builtin/packages/py-wrapt/package.py new file mode 100644 index 0000000000..65d0f3fc11 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-wrapt/package.py @@ -0,0 +1,34 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PyWrapt(PythonPackage): + """Module for decorators, wrappers and monkey patching.""" + + homepage = "https://github.com/GrahamDumpleton/wrapt" + url = "https://pypi.io/packages/source/w/wrapt/wrapt-1.10.10.tar.gz" + + version('1.10.10', '97365e906afa8b431f266866ec4e2e18') diff --git a/var/spack/repos/builtin/packages/snakemake/package.py b/var/spack/repos/builtin/packages/snakemake/package.py new file mode 100644 index 0000000000..0970b88f9c --- /dev/null +++ b/var/spack/repos/builtin/packages/snakemake/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Snakemake(PythonPackage): + """Snakemake is an MIT-licensed workflow management system.""" + + homepage = "https://snakemake.readthedocs.io/en/stable/" + url = "https://pypi.io/packages/source/s/snakemake/snakemake-3.11.2.tar.gz" + + version('3.11.2', '6bf834526078522b38d271fdf73e6b22') + + depends_on('python@3.3:') + depends_on('py-requests', type=('build', 'run')) + depends_on('py-setuptools', type=('build', 'run')) + depends_on('py-wrapt', type=('build', 'run')) -- cgit v1.2.3-70-g09d2