From 5382279fa6f9277d80333533a9afa60c8aeb5e81 Mon Sep 17 00:00:00 2001 From: lingnanyuan <1297162327@qq.com> Date: Thu, 30 Nov 2017 02:14:12 -0600 Subject: r-biomformat: Create new package. (#6517) --- .../repos/builtin/packages/r-biomformat/package.py | 48 ++++++++++++++++++++++ 1 file changed, 48 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-biomformat/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-biomformat/package.py b/var/spack/repos/builtin/packages/r-biomformat/package.py new file mode 100644 index 0000000000..fe290c1fd9 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-biomformat/package.py @@ -0,0 +1,48 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RBiomformat(RPackage): + """This is an R package for interfacing with the BIOM format. This + package includes basic tools for reading biom-format files, accessing + and subsetting data tables from a biom object (which is more complex + than a single table), as well as limited support for writing a + biom-object back to a biom-format file. The design of this API is + intended to match the python API and other tools included with the + biom-format project, but with a decidedly "R flavor" that should be + familiar to R users. This includes S4 classes and methods, as well + as extensions of common core functions/methods.""" + + homepage = "https://www.bioconductor.org/packages/biomformat/" + url = "https://git.bioconductor.org/packages/biomformat" + + version('1.4.0', git='https://git.bioconductor.org/packages/biomformat', commit='83b4b1883bc56ea93a0a6ca90fc1b18712ef0f1a') + + depends_on('r-plyr', type=('build', 'run')) + depends_on('r-jsonlite', type=('build', 'run')) + depends_on('r-matrix', type=('build', 'run')) + depends_on('r-rhdf5', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.4.0') -- cgit v1.2.3-60-g2f50