From 5c13c5892b872ed9aa32c0acf6f9df39cb2b79cc Mon Sep 17 00:00:00 2001 From: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> Date: Wed, 3 Nov 2021 16:26:30 +0100 Subject: py-nibetaseries: add new package (#27187) --- .../builtin/packages/py-nibetaseries/package.py | 59 ++++++++++++++++++++++ 1 file changed, 59 insertions(+) create mode 100644 var/spack/repos/builtin/packages/py-nibetaseries/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/py-nibetaseries/package.py b/var/spack/repos/builtin/packages/py-nibetaseries/package.py new file mode 100644 index 0000000000..34684796aa --- /dev/null +++ b/var/spack/repos/builtin/packages/py-nibetaseries/package.py @@ -0,0 +1,59 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyNibetaseries(PythonPackage): + """BetaSeries Correlations implemented in Nipype.""" + + homepage = "https://github.com/HBClab/NiBetaSeries" + pypi = "nibetaseries/nibetaseries-0.6.0.tar.gz" + git = "https://github.com/HBClab/NiBetaSeries.git" + + version('master', branch='master') + version('0.6.0', sha256='afddea1bf9b9de4ae446a5d9d2a56bdc88a5a9588bec5ecd3c8ac978fe416515') + + depends_on('python@3.5:', type=('build', 'run')) + depends_on('py-setuptools@40.8:', type='build') + depends_on('py-cython', type='build') + + with when('@master'): + depends_on('py-nipype@1.5.1:', type=('build', 'run')) + depends_on('py-pybids@0.11.1:', type=('build', 'run')) + depends_on('py-nibabel@3:', type=('build', 'run')) + depends_on('py-nistats@0.0.1b2', type=('build', 'run')) + depends_on('py-niworkflows@1.3.1:1.3', type=('build', 'run')) + depends_on('py-nilearn', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-duecredit', type=('build', 'run')) + depends_on('py-scikit-learn@0.22.0:0.22', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-mne', type=('build', 'run')) + # pypiwin32; platform_system=="Windows" + + with when('@:0.6'): + depends_on('py-nipype@1.4.2:1.4', type=('build', 'run')) + depends_on('py-pybids@0.9.3:0.9', type=('build', 'run')) + depends_on('py-nibabel@2.4.0:2.4', type=('build', 'run')) + depends_on('py-nistats@0.0.1b2', type=('build', 'run')) + depends_on('py-nilearn@0.4.2:0.4', type=('build', 'run')) + depends_on('py-pandas@0.24.0:0.24', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-niworkflows@1.0.2:1.0', type=('build', 'run')) + depends_on('py-duecredit@0.6.4:0.6', type=('build', 'run')) + depends_on('py-scikit-learn@0.19.2:0.19', type=('build', 'run')) + depends_on('py-matplotlib@2.2.4:2.2', type=('build', 'run')) + depends_on('py-mne@0.18.1:0.18', type=('build', 'run')) + # pypiwin32; platform_system=="Windows" + + @run_after('install') + def patch_bin(self): + # pkg_resources fails to find the dependencies, resulting in errors + # like: pkg_resources.DistributionNotFound: The 'sklearn' distribution + # was not found and is required by nilearn + filter_file("__requires__ = 'nibetaseries==0.post1+gaa7d2ea'", "", + join_path(self.prefix.bin, 'nibs'), string=True) -- cgit v1.2.3-70-g09d2