From 6abe8e7d9114f0f202a5ba722f9877b6b1cc5a55 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Fri, 18 Aug 2017 09:36:35 -0500 Subject: parsimonator: new package (#5143) * parsimonator: new package * adding variant conflict --- .../repos/builtin/packages/parsimonator/package.py | 65 ++++++++++++++++++++++ 1 file changed, 65 insertions(+) create mode 100644 var/spack/repos/builtin/packages/parsimonator/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/parsimonator/package.py b/var/spack/repos/builtin/packages/parsimonator/package.py new file mode 100644 index 0000000000..5b979f23e3 --- /dev/null +++ b/var/spack/repos/builtin/packages/parsimonator/package.py @@ -0,0 +1,65 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Parsimonator(MakefilePackage): + """Parsimonator is a no-frills light-weight implementation for building + starting trees under parsimony for RAxML""" + + homepage = "http://www.exelixis-lab.org/" + url = "https://github.com/stamatak/Parsimonator-1.0.2" + + version('1.0.2', git='https://github.com/stamatak/Parsimonator-1.0.2.git', commit='78368c6ab1e9adc7e9c6ec9256dd7ff2a5bb1b0a') + + variant('sse', default=True, description='Enable SSE in order to substantially speed up execution') + variant('avx', default=False, description='Enable AVX in order to substantially speed up execution') + + conflicts('+avx', when='+sse') + + @property + def makefile_file(self): + if '+sse' in self.spec: + return 'Makefile.SSE3.gcc' + elif '+avx' in self.spec: + return 'Makefile.AVX.gcc' + else: + return 'Makefile.gcc' + + def edit(self, spec, prefix): + makefile = FileFilter(self.makefile_file) + makefile.filter('CC = gcc', 'CC = %s' % spack_cc) + + def build(self, spec, prefix): + make('-f', self.makefile_file) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + if '+sse' in spec: + install('parsimonator-SSE3', prefix.bin) + elif '+avx' in spec: + install('parsimonator-AVX', prefix.bin) + else: + install('parsimonator', prefix.bin) -- cgit v1.2.3-60-g2f50