From 6cf91449d476e8bcc2ebc1c407188ea614590053 Mon Sep 17 00:00:00 2001 From: Glenn Johnson Date: Tue, 20 Apr 2021 04:34:13 -0500 Subject: r-globaltest: new package (#23098) --- .../repos/builtin/packages/r-globaltest/package.py | 26 ++++++++++++++++++++++ 1 file changed, 26 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-globaltest/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-globaltest/package.py b/var/spack/repos/builtin/packages/r-globaltest/package.py new file mode 100644 index 0000000000..3d45b6648e --- /dev/null +++ b/var/spack/repos/builtin/packages/r-globaltest/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RGlobaltest(RPackage): + """Testing Groups of Covariates/Features for Association with a Response + Variable, with Applications to Gene Set Testing: + + The global test tests groups of covariates (or features) for association + with a response variable. This package implements the test with diagnostic + plots and multiple testing utilities, along with several functions to + facilitate the use of this test for gene set testing of GO and KEGG + terms.""" + + bioc = "globaltest" + + version('5.44.0', commit='571933d5c779a241740be913ff49ecdd59bcbc45') + + depends_on('r-survival', type=('build', 'run')) + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-annotationdbi', type=('build', 'run')) + depends_on('r-annotate', type=('build', 'run')) -- cgit v1.2.3-70-g09d2