From 6fb30acb77788d7fff88d8668f425b2fa82d6aed Mon Sep 17 00:00:00 2001 From: Harsh Bhatia Date: Mon, 29 Jun 2020 23:58:13 -0700 Subject: dssp: new package at v3.1.4 (#17188) Renamed xspp to hspp --- var/spack/repos/builtin/packages/dssp/package.py | 32 +++++++++++++++++ var/spack/repos/builtin/packages/hssp/package.py | 46 ++++++++++++++++++++++++ var/spack/repos/builtin/packages/xssp/package.py | 41 --------------------- 3 files changed, 78 insertions(+), 41 deletions(-) create mode 100644 var/spack/repos/builtin/packages/dssp/package.py create mode 100644 var/spack/repos/builtin/packages/hssp/package.py delete mode 100644 var/spack/repos/builtin/packages/xssp/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/dssp/package.py b/var/spack/repos/builtin/packages/dssp/package.py new file mode 100644 index 0000000000..626464b67c --- /dev/null +++ b/var/spack/repos/builtin/packages/dssp/package.py @@ -0,0 +1,32 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Dssp(AutotoolsPackage): + """'mkdssp' utility. (dictionary of protein secondary structure)""" + + homepage = "https://github.com/cmbi/dssp" + url = "https://github.com/cmbi/dssp/archive/3.1.4.tar.gz" + + version('3.1.4', sha256='496282b4b5defc55d111190ab9f1b615a9574a2f090e7cf5444521c747b272d4') + version('2.3.0', sha256='4c95976d86dc64949cb0807fbd58c7bee5393df0001999405863dc90f05846c6') + + depends_on('autoconf', type='build') + depends_on('automake', type='build') + depends_on('libtool', type='build') + depends_on('m4', type='build') + depends_on('boost@1.48:') + + def configure_args(self): + args = [ + "--with-boost=%s" % self.spec['boost'].prefix] + return args + + @run_after('configure') + def edit(self): + makefile = FileFilter(join_path(self.stage.source_path, 'Makefile')) + makefile.filter('.*-Werror .*', ' -Wno-error \\') diff --git a/var/spack/repos/builtin/packages/hssp/package.py b/var/spack/repos/builtin/packages/hssp/package.py new file mode 100644 index 0000000000..073cbedea6 --- /dev/null +++ b/var/spack/repos/builtin/packages/hssp/package.py @@ -0,0 +1,46 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Hssp(AutotoolsPackage): + """The source code for building the mkhssp and hsspconv programs is bundled + in the hssp project. + + The mkhssp executable creates stockholm files with hssp annotations in + them. The hsspconv executable converts stockholm to the original hssp + format. + """ + + homepage = "https://github.com/cmbi/hssp" + url = "https://github.com/cmbi/hssp/archive/3.0.10.tar.gz" + + version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a') + version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658') + version('3.0.8', sha256='45e316ff2c700f09971027f9e813cf3139d36ab5951d337948fafab53e00d821') + version('3.0.7', sha256='eb6c3276eeb1261c55568ebfae301033904fe619d84b380313dbf137a2b06cd1') + version('3.0.6', sha256='b868e0077270361276c1c256e2f137ad95f7e84deeb61ae267f7559ebaab7d59') + version('3.0.5', sha256='fded09f08cfb12e578e4823295dc0d0aaeff6559d5e099df23c5bcc911597ccd') + version('3.0.4', sha256='fe786c3a75dafe93bb6a97c2840c3edb0d0e81446874082dc053e136dd3b7f68') + version('3.0.3', sha256='c4826ed74a74e3238f45104cb21ca4ad9e5b49498891e991a3a3a7a3b9bdbe1d') + version('3.0.2', sha256='edb43dc7407a5e91d68d27b732887c6e70a1988e8ddbba03d430713c40c40139') + version('3.0.1', sha256='8f56bc51d7b5f035442c189dd7096f0dd25528303722507365f5e746d5ad9a73') + + depends_on('autoconf', type='build') + depends_on('automake', type='build') + depends_on('libtool', type='build') + depends_on('m4', type='build') + depends_on('boost@1.48:') + + def configure_args(self): + args = [ + "--with-boost=%s" % self.spec['boost'].prefix] + return args + + @run_after('configure') + def edit(self): + makefile = FileFilter(join_path(self.stage.source_path, 'Makefile')) + makefile.filter('.*-Werror .*', ' -Wno-error \\') diff --git a/var/spack/repos/builtin/packages/xssp/package.py b/var/spack/repos/builtin/packages/xssp/package.py deleted file mode 100644 index 4a8149cb1b..0000000000 --- a/var/spack/repos/builtin/packages/xssp/package.py +++ /dev/null @@ -1,41 +0,0 @@ -# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other -# Spack Project Developers. See the top-level COPYRIGHT file for details. -# -# SPDX-License-Identifier: (Apache-2.0 OR MIT) - -from spack import * - - -class Xssp(AutotoolsPackage): - """The source code for building the mkdssp, mkhssp, hsspconv, and hsspsoap - programs is bundled in the xssp project""" - - homepage = "https://github.com/cmbi/xssp" - url = "https://github.com/cmbi/xssp/archive/3.0.10.tar.gz" - - version('3.0.10', sha256='b475d6fa62098df0e54c8dbdaa0b32de93bf5a393335f73f9b5a7e95f3090d2a') - version('3.0.9', sha256='42a9a93c48d22478212dcaf6ceb3feb64443e4cb2e8cccdd402b47a595d16658') - version('3.0.8', sha256='45e316ff2c700f09971027f9e813cf3139d36ab5951d337948fafab53e00d821') - version('3.0.7', sha256='eb6c3276eeb1261c55568ebfae301033904fe619d84b380313dbf137a2b06cd1') - version('3.0.6', sha256='b868e0077270361276c1c256e2f137ad95f7e84deeb61ae267f7559ebaab7d59') - version('3.0.5', sha256='fded09f08cfb12e578e4823295dc0d0aaeff6559d5e099df23c5bcc911597ccd') - version('3.0.4', sha256='fe786c3a75dafe93bb6a97c2840c3edb0d0e81446874082dc053e136dd3b7f68') - version('3.0.3', sha256='c4826ed74a74e3238f45104cb21ca4ad9e5b49498891e991a3a3a7a3b9bdbe1d') - version('3.0.2', sha256='edb43dc7407a5e91d68d27b732887c6e70a1988e8ddbba03d430713c40c40139') - version('3.0.1', sha256='8f56bc51d7b5f035442c189dd7096f0dd25528303722507365f5e746d5ad9a73') - - depends_on('autoconf', type='build') - depends_on('automake', type='build') - depends_on('libtool', type='build') - depends_on('m4', type='build') - depends_on('boost@1.48:') - - def configure_args(self): - args = [ - "--with-boost=%s" % self.spec['boost'].prefix] - return args - - @run_after('configure') - def edit(self): - makefile = FileFilter(join_path(self.stage.source_path, 'Makefile')) - makefile.filter('.*-Werror .*', ' -Wno-error \\') -- cgit v1.2.3-60-g2f50