From 718ceb5e852f84ff80bdf599b0bf47026ac22421 Mon Sep 17 00:00:00 2001 From: Justin Stanley Date: Fri, 26 Oct 2018 20:23:45 -0500 Subject: new package: msmc (starting at 1.1.0) (#9654) --- var/spack/repos/builtin/packages/msmc/package.py | 34 ++++++++++++++++++++++++ 1 file changed, 34 insertions(+) create mode 100644 var/spack/repos/builtin/packages/msmc/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/msmc/package.py b/var/spack/repos/builtin/packages/msmc/package.py new file mode 100644 index 0000000000..7acde0f400 --- /dev/null +++ b/var/spack/repos/builtin/packages/msmc/package.py @@ -0,0 +1,34 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Msmc(MakefilePackage): + """This software implements MSMC, a method to infer population size + and gene flow from multiple genome sequences""" + + homepage = "https://github.com/stschiff/msmc" + url = "https://github.com/stschiff/msmc/archive/v1.1.0.tar.gz" + + version('1.1.0', sha256='989064400fe392ca3d2ac1a253ce7edf1801b6a7eeb77bbf2ff7bf67910216c4') + + depends_on('gsl', type=('build', 'run')) + depends_on('dmd', type='build') + + def edit(self, spec, prefix): + filter_file('dmd', + join_path(self.spec['dmd'].prefix.linux.bin64, 'dmd'), + 'Makefile', string=True) + + def build(self, spec, prefix): + gsllibdir = self.spec['gsl'].prefix.lib + libgsl = join_path(gsllibdir, 'libgsl.a') + libgslcblas = join_path(gsllibdir, 'libgslcblas.a') + make('GSL={0} {1}'.format(libgsl, libgslcblas)) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install_tree('build', prefix.bin) -- cgit v1.2.3-70-g09d2