From 729b1c9fa63ac11475fa2f33795dbeebbc331df1 Mon Sep 17 00:00:00 2001 From: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> Date: Mon, 5 Dec 2022 07:02:27 +0100 Subject: py-mne: add 1.2.2, 1.2.3 and dependency packages (#34295) * py-mne: add 1.2.2 and depencendy packages * py-mne: add 1.2.3 * Remove unnecessary when statement --- .../repos/builtin/packages/py-h5io/package.py | 22 +++++++++++++++++++ var/spack/repos/builtin/packages/py-mne/package.py | 25 ++++++++++++++++++---- .../builtin/packages/py-pymatreader/package.py | 23 ++++++++++++++++++++ 3 files changed, 66 insertions(+), 4 deletions(-) create mode 100644 var/spack/repos/builtin/packages/py-h5io/package.py create mode 100644 var/spack/repos/builtin/packages/py-pymatreader/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/py-h5io/package.py b/var/spack/repos/builtin/packages/py-h5io/package.py new file mode 100644 index 0000000000..3d2ea8744a --- /dev/null +++ b/var/spack/repos/builtin/packages/py-h5io/package.py @@ -0,0 +1,22 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyH5io(PythonPackage): + """Python Objects Onto HDF5.""" + + homepage = "http://h5io.github.io" + pypi = "h5io/h5io-0.1.7.tar.gz" + git = "https://github.com/h5io/h5io.git" + + version("0.1.7", sha256="be2684e678a28a5d59140de838f0165f095af865e48b8e498a279a3c2b89303e") + + depends_on("python@3.7:", type=("build", "run")) + depends_on("py-setuptools", type="build") + + depends_on("py-numpy", type=("build", "run")) + depends_on("py-h5py", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/py-mne/package.py b/var/spack/repos/builtin/packages/py-mne/package.py index 4b8ddad454..413080425a 100644 --- a/var/spack/repos/builtin/packages/py-mne/package.py +++ b/var/spack/repos/builtin/packages/py-mne/package.py @@ -11,20 +11,39 @@ class PyMne(PythonPackage): homepage = "http://mne.tools/" pypi = "mne/mne-0.23.4.tar.gz" + git = "https://github.com/mne-tools/mne-python.git" + version("1.2.3", sha256="b300dcee69ffb878cdbc5c02490e877df385c1b9482622e3aa1da06a604a6e37") + version("1.2.2", sha256="d40743d6ca7ae3919a557166fd5fc4c00a9719e40c07346baad57964e15f02bb") version("0.23.4", sha256="ecace5caacf10961ebb74cc5e0ead4d4dbc55fed006eab1e644da144092354e9") version("0.18.2", sha256="aa2e72ad3225efdad39b05e67cd5c88dbd5c3fabf5e1705e459347131f114bc6") - variant("full", default=False, description="Enable full functionality.") + # don't support full variant for newer versions (for now) because dependencies get out of hand + variant("full", default=False, when="@:23", description="Enable full functionality.") + variant("hdf5", default=False, when="@1:", description="Enable hdf5 functionality.") + depends_on("python@3.7:", when="@0.24:", type=("build", "run")) depends_on("python@3.6:", when="@0.23:", type=("build", "run")) depends_on("python@3.5:", type=("build", "run")) depends_on("py-setuptools", type="build") + # requirements_base.txt with versions specified in README.rst (marked with *) + depends_on("py-numpy@1.18.1:", when="@1:", type=("build", "run")) # * depends_on("py-numpy@1.15.4:", when="@0.23:", type=("build", "run")) depends_on("py-numpy@1.11.3:", type=("build", "run")) + depends_on("py-scipy@1.4.1:", when="@1:", type=("build", "run")) # * depends_on("py-scipy@1.1.0:", when="@0.23:", type=("build", "run")) depends_on("py-scipy@0.17.1:", type=("build", "run")) + depends_on("py-matplotlib@3.1:", when="@1:", type=("build", "run")) # * + depends_on("py-tqdm", when="@1:", type=("build", "run")) + depends_on("py-pooch@1.5:", when="@1:", type=("build", "run")) + depends_on("py-decorator", when="@1:", type=("build", "run")) + depends_on("py-packaging", when="@1:", type=("build", "run")) + depends_on("py-jinja2", when="@1:", type=("build", "run")) + + with when("+hdf5"): + depends_on("py-h5io", type=("build", "run")) + depends_on("py-pymatreader", type=("build", "run")) with when("+full"): # requirements.txt with versions specified in README.rst (marked with *) @@ -63,6 +82,4 @@ class PyMne(PythonPackage): depends_on("py-ipyvtk-simple", type=("build", "run")) # README.rst - - -# depends_on('py-cupy@4.0:', type=('build', 'run')) # not yet in spack + # depends_on('py-cupy@4.0:', type=('build', 'run')) # not yet in spack diff --git a/var/spack/repos/builtin/packages/py-pymatreader/package.py b/var/spack/repos/builtin/packages/py-pymatreader/package.py new file mode 100644 index 0000000000..cb3af84998 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-pymatreader/package.py @@ -0,0 +1,23 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyPymatreader(PythonPackage): + """Convenient reader for Matlab mat files.""" + + homepage = "https://gitlab.com/obob/pymatreader" + pypi = "pymatreader/pymatreader-0.0.30.tar.gz" + + version("0.0.30", sha256="c8187b6ee77a9b1ec0d8ccae9b22c9031d01104a412737cc4a71e6d993a1a12b") + + depends_on("py-setuptools", type="build") + + depends_on("py-h5py", type=("build", "run")) + depends_on("py-scipy@:1.6,1.7.1:", type=("build", "run")) + depends_on("py-numpy", type=("build", "run")) + depends_on("py-xmltodict", type=("build", "run")) + depends_on("py-future", type=("build", "run")) -- cgit v1.2.3-60-g2f50