From 86a127788d8ea91cedd93406be6aee8db38f7aef Mon Sep 17 00:00:00 2001 From: Luke Diorio-Toth Date: Tue, 5 Jul 2022 12:46:58 -0500 Subject: Package/ont-guppy (#31417) * guppy: new package * adding different hashs/urls * working now * guppy: new package * ont-guppy: new package * ont-guppy: new package * ont-guppy: fixed style --- .../repos/builtin/packages/ont-guppy/package.py | 52 ++++++++++++++++++++++ 1 file changed, 52 insertions(+) create mode 100644 var/spack/repos/builtin/packages/ont-guppy/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/ont-guppy/package.py b/var/spack/repos/builtin/packages/ont-guppy/package.py new file mode 100644 index 0000000000..29ee5fdc5f --- /dev/null +++ b/var/spack/repos/builtin/packages/ont-guppy/package.py @@ -0,0 +1,52 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +import platform + +from spack.package import * + +# If you need to add a new version, please be aware that: +# - versions in the following dict are automatically added to the package +# - version tuple must be in the form (checksum, url) +# - checksum must be sha256 +# - package key must be in the form '{os}-{arch}' where 'os' is in the +# format returned by platform.system() and 'arch' by platform.machine() +# - the newest non-cuda version should be set as 'preferred_ver' +# - a cuda dependency must be set for each new cuda version + +_versions = { + '6.1.7-cuda': { + 'Linux-x86_64': ('c3dd8f8b7567061a155d1921586dd95540410b35b2ccb8a33a463d9db8642711', 'https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linux64.tar.gz'), + 'Linux-aarch64': ('e821fe85b538e1a5d38c17c8fc7497f6fad200ff9fdf0c98921b4d7b1d490914', 'https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy_6.1.7_linuxaarch64_cuda10.tar.gz'), + }, + '6.1.7': { + 'Linux-x86_64': ('4540441ca5393d76f05485f38cdba2dc0b5785af31d77006bdc3664b3f2644cb', 'https://cdn.oxfordnanoportal.com/software/analysis/ont-guppy-cpu_6.1.7_linux64.tar.gz') + } +} + + +class OntGuppy(Package): + """Guppy: local accelerated basecalling for Nanopore data""" + + homepage = "https://community.nanoporetech.com/downloads/guppy/release_notes" + preferred_ver = "6.1.7" + + preferred_defined = False + for ver, packages in _versions.items(): + key = "{0}-{1}".format(platform.system(), platform.machine()) + pkg = packages.get(key) + if pkg: + is_preferred = not preferred_defined and (ver == preferred_ver) + if is_preferred: + preferred_defined = True + + version(ver, sha256=pkg[0], url=pkg[1], preferred=is_preferred) + + depends_on('cuda@11.0.0:', when='@6.1.7-cuda', type='run') + + def install(self, spec, prefix): + install_tree('bin', prefix.bin) + install_tree('data', prefix.data) + install_tree('lib', prefix.lib) -- cgit v1.2.3-60-g2f50