From 87e2e66417d078cc280a04f450b7c0d22daeef2f Mon Sep 17 00:00:00 2001 From: David Orman Date: Fri, 30 Mar 2018 15:21:14 -0500 Subject: Features/mindthegap (#7648) * added htslib 1.7 and checksum * mindthegap: New package --- .../repos/builtin/packages/mindthegap/package.py | 41 ++++++++++++++++++++++ 1 file changed, 41 insertions(+) create mode 100644 var/spack/repos/builtin/packages/mindthegap/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/mindthegap/package.py b/var/spack/repos/builtin/packages/mindthegap/package.py new file mode 100644 index 0000000000..a9b9fbdf7a --- /dev/null +++ b/var/spack/repos/builtin/packages/mindthegap/package.py @@ -0,0 +1,41 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mindthegap(CMakePackage): + """MindTheGap is a software that performs integrated detection and + assembly of genomic insertion variants in NGS read datasets with + respect to a reference genome.""" + + homepage = "https://gatb.inria.fr/software/mind-the-gap/" + url = "https://github.com/GATB/MindTheGap.git" + + version('2.0.2', + tags='v2.0.2', + git='https://github.com/GATB/MindTheGap.git', + submodules=True) + + depends_on('zlib') -- cgit v1.2.3-70-g09d2