From 8b2abfb28be0f118595413b8a72bf546f1100e1a Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Mon, 20 Nov 2017 22:51:35 -0600 Subject: masurca: new package (#6386) --- .../repos/builtin/packages/masurca/package.py | 46 ++++++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/masurca/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/masurca/package.py b/var/spack/repos/builtin/packages/masurca/package.py new file mode 100644 index 0000000000..519ba29e11 --- /dev/null +++ b/var/spack/repos/builtin/packages/masurca/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * +import distutils.dir_util + + +class Masurca(Package): + """MaSuRCA is whole genome assembly software. It combines the efficiency + of the de Bruijn graph and Overlap-Layout-Consensus (OLC) + approaches.""" + + homepage = "http://www.genome.umd.edu/masurca.html" + url = "ftp://ftp.genome.umd.edu/pub/MaSuRCA/latest/MaSuRCA-3.2.3.tar.gz" + + version('3.2.3', 'd9b4419adfe6b64e42ce986253a50ff5') + + depends_on('perl', type=('build', 'run')) + depends_on('boost') + depends_on('zlib') + + def install(self, spec, prefix): + installer = Executable('./install.sh') + installer() + distutils.dir_util.copy_tree(".", prefix) -- cgit v1.2.3-60-g2f50