From 967370aa0b5a673403aca53cd12837c12b693e1c Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Thu, 10 Aug 2017 20:03:52 -0500 Subject: impute2: new package (#5062) --- .../repos/builtin/packages/impute2/package.py | 39 ++++++++++++++++++++++ 1 file changed, 39 insertions(+) create mode 100644 var/spack/repos/builtin/packages/impute2/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/impute2/package.py b/var/spack/repos/builtin/packages/impute2/package.py new file mode 100644 index 0000000000..b4b0cb20d2 --- /dev/null +++ b/var/spack/repos/builtin/packages/impute2/package.py @@ -0,0 +1,39 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Impute2(Package): + """IMPUTE2 is a genotype imputation and haplotype phasing program based on + ideas from Howie et al. 2009.""" + + homepage = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.html#home" + url = "https://mathgen.stats.ox.ac.uk/impute/impute_v2.3.2_x86_64_dynamic.tgz" + + version('2.3.2', '0e1bafb8f63eb5cf9ae02ab761af58aa') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('impute2', prefix.bin) -- cgit v1.2.3-70-g09d2