From 83af842a74757548e6f0370461c13aa358f681a0 Mon Sep 17 00:00:00 2001 From: "Gregory L. Lee" Date: Mon, 1 Jun 2015 08:38:32 -0700 Subject: fixed cython activation conflict --- var/spack/packages/py-h5py/package.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) (limited to 'var') diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/packages/py-h5py/package.py index f72b3ac06e..6293da5407 100644 --- a/var/spack/packages/py-h5py/package.py +++ b/var/spack/packages/py-h5py/package.py @@ -7,8 +7,9 @@ class PyH5py(Package): url = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz" version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758') + version('2.5.0', '6e4301b5ad5da0d51b0a1e5ac19e3b74') - extends('python', ignore=lambda f: re.match(r'cy*', f)) + extends('python', ignore=lambda f: re.match(r'bin/cy*', f)) depends_on('hdf5') depends_on('py-numpy') depends_on('py-cython') -- cgit v1.2.3-70-g09d2 From 74b0a9c059bc854d94e2160efbe9bd3fa401af0f Mon Sep 17 00:00:00 2001 From: "Gregory L. Lee" Date: Mon, 1 Jun 2015 08:39:01 -0700 Subject: updated Python extension versions --- var/spack/packages/py-cython/package.py | 3 ++- var/spack/packages/py-dateutil/package.py | 1 + var/spack/packages/py-ipython/package.py | 1 + var/spack/packages/py-matplotlib/package.py | 3 ++- var/spack/packages/py-nose/package.py | 1 + var/spack/packages/py-numpy/package.py | 1 + var/spack/packages/py-pandas/package.py | 1 + var/spack/packages/py-pygments/package.py | 1 + var/spack/packages/py-pylint/package.py | 1 + var/spack/packages/py-pytz/package.py | 1 + var/spack/packages/py-rpy2/package.py | 1 + var/spack/packages/py-scikit-learn/package.py | 1 + var/spack/packages/py-scipy/package.py | 1 + var/spack/packages/py-setuptools/package.py | 1 + var/spack/packages/py-sip/package.py | 1 + var/spack/packages/py-virtualenv/package.py | 1 + var/spack/packages/python/package.py | 1 + 17 files changed, 19 insertions(+), 2 deletions(-) (limited to 'var') diff --git a/var/spack/packages/py-cython/package.py b/var/spack/packages/py-cython/package.py index af67a15526..68eb735ad9 100644 --- a/var/spack/packages/py-cython/package.py +++ b/var/spack/packages/py-cython/package.py @@ -3,9 +3,10 @@ from spack import * class PyCython(Package): """The Cython compiler for writing C extensions for the Python language.""" homepage = "https://pypi.python.org/pypi/cython" - url = "https://pypi.python.org/packages/source/C/Cython/Cython-0.21.2.tar.gz" + url = "https://pypi.python.org/packages/source/C/Cython/cython-0.22.tar.gz" version('0.21.2', 'd21adb870c75680dc857cd05d41046a4') + version('0.22', '1ae25add4ef7b63ee9b4af697300d6b6') extends('python') diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/packages/py-dateutil/package.py index 3bd2f2ca13..0a17f2f2d2 100644 --- a/var/spack/packages/py-dateutil/package.py +++ b/var/spack/packages/py-dateutil/package.py @@ -6,6 +6,7 @@ class PyDateutil(Package): url = "https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.0.tar.gz" version('2.4.0', '75714163bb96bedd07685cdb2071b8bc') + version('2.4.2', '4ef68e1c485b09e9f034e10473e5add2') extends('python') depends_on('py-setuptools') diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/packages/py-ipython/package.py index 907ea9edcd..8d0e64a07f 100644 --- a/var/spack/packages/py-ipython/package.py +++ b/var/spack/packages/py-ipython/package.py @@ -6,6 +6,7 @@ class PyIpython(Package): url = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz" version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf') + version('3.1.0', 'a749d90c16068687b0ec45a27e72ef8f') extends('python') depends_on('py-pygments') diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/packages/py-matplotlib/package.py index 04037f004e..e7ce3dfd24 100644 --- a/var/spack/packages/py-matplotlib/package.py +++ b/var/spack/packages/py-matplotlib/package.py @@ -7,6 +7,7 @@ class PyMatplotlib(Package): url = "https://pypi.python.org/packages/source/m/matplotlib/matplotlib-1.4.2.tar.gz" version('1.4.2', '7d22efb6cce475025733c50487bd8898') + version('1.4.3', '86af2e3e3c61849ac7576a6f5ca44267') extends('python', ignore=r'bin/nosetests.*$') @@ -28,7 +29,7 @@ class PyMatplotlib(Package): def install(self, spec, prefix): python('setup.py', 'install', '--prefix=%s' % prefix) - if str(self.version) == '1.4.2': + if str(self.version) in ['1.4.2', '1.4.3']: # hack to fix configuration file config_file = None for p,d,f in os.walk(prefix.lib): diff --git a/var/spack/packages/py-nose/package.py b/var/spack/packages/py-nose/package.py index 155019289d..e7c6cf0264 100644 --- a/var/spack/packages/py-nose/package.py +++ b/var/spack/packages/py-nose/package.py @@ -8,6 +8,7 @@ class PyNose(Package): url = "https://pypi.python.org/packages/source/n/nose/nose-1.3.4.tar.gz" version('1.3.4', '6ed7169887580ddc9a8e16048d38274d') + version('1.3.6', '0ca546d81ca8309080fc80cb389e7a16') extends('python', ignore=r'bin/nosetests.*$') depends_on('py-setuptools') diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/packages/py-numpy/package.py index e6cb6a464f..6534e063d2 100644 --- a/var/spack/packages/py-numpy/package.py +++ b/var/spack/packages/py-numpy/package.py @@ -6,6 +6,7 @@ class PyNumpy(Package): url = "https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz" version('1.9.1', '78842b73560ec378142665e712ae4ad9') + version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645') extends('python') depends_on('py-nose') diff --git a/var/spack/packages/py-pandas/package.py b/var/spack/packages/py-pandas/package.py index 2f441f0d22..acbb5114a3 100644 --- a/var/spack/packages/py-pandas/package.py +++ b/var/spack/packages/py-pandas/package.py @@ -7,6 +7,7 @@ class PyPandas(Package): url = "https://pypi.python.org/packages/source/p/pandas/pandas-0.16.0.tar.gz#md5=bfe311f05dc0c351f8955fbd1e296e73" version('0.16.0', 'bfe311f05dc0c351f8955fbd1e296e73') + version('0.16.1', 'fac4f25748f9610a3e00e765474bdea8') extends('python') depends_on('py-dateutil') diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/packages/py-pygments/package.py index 990eebde65..7e07bf6869 100644 --- a/var/spack/packages/py-pygments/package.py +++ b/var/spack/packages/py-pygments/package.py @@ -6,6 +6,7 @@ class PyPygments(Package): url = "https://pypi.python.org/packages/source/P/Pygments/Pygments-2.0.1.tar.gz" version('2.0.1', 'e0daf4c14a4fe5b630da765904de4d6c') + version('2.0.2', '238587a1370d62405edabd0794b3ec4a') extends('python') depends_on('py-setuptools') diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/packages/py-pylint/package.py index 7a6ee7dbbc..9579708c29 100644 --- a/var/spack/packages/py-pylint/package.py +++ b/var/spack/packages/py-pylint/package.py @@ -7,6 +7,7 @@ class PyPylint(Package): url = "https://pypi.python.org/packages/source/p/pylint/pylint-1.4.1.tar.gz" version('1.4.1', 'df7c679bdcce5019389038847e4de622') + version('1.4.3', '5924c1c7ca5ca23647812f5971d0ea44') extends('python') depends_on('py-nose') diff --git a/var/spack/packages/py-pytz/package.py b/var/spack/packages/py-pytz/package.py index 80bcfe82ca..da6311a784 100644 --- a/var/spack/packages/py-pytz/package.py +++ b/var/spack/packages/py-pytz/package.py @@ -6,6 +6,7 @@ class PyPytz(Package): url = "https://pypi.python.org/packages/source/p/pytz/pytz-2014.10.tar.gz" version('2014.10', 'eb1cb941a20c5b751352c52486aa1dd7') + version('2015.4', '417a47b1c432d90333e42084a605d3d8') extends('python') diff --git a/var/spack/packages/py-rpy2/package.py b/var/spack/packages/py-rpy2/package.py index dd0c0672af..a0b03d03e3 100644 --- a/var/spack/packages/py-rpy2/package.py +++ b/var/spack/packages/py-rpy2/package.py @@ -6,6 +6,7 @@ class PyRpy2(Package): url = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz" version('2.5.4', '115a20ac30883f096da2bdfcab55196d') + version('2.5.6', 'a36e758b633ce6aec6a5f450bfee980f') extends('python') depends_on('py-setuptools') diff --git a/var/spack/packages/py-scikit-learn/package.py b/var/spack/packages/py-scikit-learn/package.py index c59c05a619..5b078ce901 100644 --- a/var/spack/packages/py-scikit-learn/package.py +++ b/var/spack/packages/py-scikit-learn/package.py @@ -6,6 +6,7 @@ class PyScikitLearn(Package): url = "https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz" version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d') + version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e') extends('python') diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/packages/py-scipy/package.py index b5325b919f..cdcf74534b 100644 --- a/var/spack/packages/py-scipy/package.py +++ b/var/spack/packages/py-scipy/package.py @@ -6,6 +6,7 @@ class PyScipy(Package): url = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz" version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a') + version('0.15.1', 'be56cd8e60591d6332aac792a5880110') extends('python') depends_on('py-nose') diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py index 755288d55c..d3f11ed469 100644 --- a/var/spack/packages/py-setuptools/package.py +++ b/var/spack/packages/py-setuptools/package.py @@ -6,6 +6,7 @@ class PySetuptools(Package): url = "https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz" version('11.3.1', '01f69212e019a2420c1693fb43593930') + version('16.0', '0ace0b96233516fc5f7c857d086aa3ad') extends('python') diff --git a/var/spack/packages/py-sip/package.py b/var/spack/packages/py-sip/package.py index 6753bdd2a5..e4a6fb6961 100644 --- a/var/spack/packages/py-sip/package.py +++ b/var/spack/packages/py-sip/package.py @@ -7,6 +7,7 @@ class PySip(Package): url = "http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.5/sip-4.16.5.tar.gz" version('4.16.5', '6d01ea966a53e4c7ae5c5e48c40e49e5') + version('4.16.7', '32abc003980599d33ffd789734de4c36') extends('python') diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/packages/py-virtualenv/package.py index 2d10d440a6..037a6fc59f 100644 --- a/var/spack/packages/py-virtualenv/package.py +++ b/var/spack/packages/py-virtualenv/package.py @@ -7,6 +7,7 @@ class PyVirtualenv(Package): url = "https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.11.6.tar.gz" version('1.11.6', 'f61cdd983d2c4e6aeabb70b1060d6f49') + version('13.0.1', '1ffc011bde6667f0e37ecd976f4934db') extends('python') depends_on('py-setuptools') diff --git a/var/spack/packages/python/package.py b/var/spack/packages/python/package.py index 797900527d..000881a846 100644 --- a/var/spack/packages/python/package.py +++ b/var/spack/packages/python/package.py @@ -15,6 +15,7 @@ class Python(Package): extendable = True version('2.7.8', 'd235bdfa75b8396942e360a70487ee00') + version('2.7.10', 'c685ef0b8e9f27b5e3db5db12b268ac6') depends_on("openssl") depends_on("bzip2") -- cgit v1.2.3-70-g09d2 From 6dffe2ddd1953f0471566d5df520a862afd37ce1 Mon Sep 17 00:00:00 2001 From: "Gregory L. Lee" Date: Wed, 3 Jun 2015 10:07:21 -0700 Subject: updated url --- var/spack/packages/py-scientificpython/package.py | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) (limited to 'var') diff --git a/var/spack/packages/py-scientificpython/package.py b/var/spack/packages/py-scientificpython/package.py index 020d830703..df2c86caac 100644 --- a/var/spack/packages/py-scientificpython/package.py +++ b/var/spack/packages/py-scientificpython/package.py @@ -7,8 +7,7 @@ class PyScientificpython(Package): visualization, and parallelization.""" homepage = "https://sourcesup.renater.fr/projects/scientific-py/" - url = "https://sourcesup.renater.fr/frs/download.php/4411/ScientificPython-2.8.1.tar.gz" - + url = "https://sourcesup.renater.fr/frs/download.php/file/4411/ScientificPython-2.8.1.tar.gz" version('2.8.1', '73ee0df19c7b58cdf2954261f0763c77') extends('python') -- cgit v1.2.3-70-g09d2 From c4f5a881e694cd891b792210ce215ec40879e82a Mon Sep 17 00:00:00 2001 From: "Gregory L. Lee" Date: Wed, 3 Jun 2015 10:08:07 -0700 Subject: new Python extensions --- var/spack/packages/py-genders/package.py | 15 +++++++++++++++ var/spack/packages/py-pypar/package.py | 14 ++++++++++++++ 2 files changed, 29 insertions(+) create mode 100644 var/spack/packages/py-genders/package.py create mode 100644 var/spack/packages/py-pypar/package.py (limited to 'var') diff --git a/var/spack/packages/py-genders/package.py b/var/spack/packages/py-genders/package.py new file mode 100644 index 0000000000..c49c8fd5b2 --- /dev/null +++ b/var/spack/packages/py-genders/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyGenders(Package): + """Genders is a static cluster configuration database used for cluster configuration management. It is used by a variety of tools and scripts for management of large clusters.""" + homepage = "https://github.com/chaos/genders" + url = "https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz" + + version('1.22', '9ea59a024dcbddb85b0ed25ddca9bc8e', url='https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz') + extends('python') + + def install(self, spec, prefix): + configure("--prefix=%s" %prefix) + make(parallel=False) + make("install") + diff --git a/var/spack/packages/py-pypar/package.py b/var/spack/packages/py-pypar/package.py new file mode 100644 index 0000000000..af9c76ccd8 --- /dev/null +++ b/var/spack/packages/py-pypar/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyPypar(Package): + """Pypar is an efficient but easy-to-use module that allows programs written in Python to run in parallel on multiple processors and communicate using MPI.""" + homepage = "http://code.google.com/p/pypar/" + url = "https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz" + + version('2.1.5_108', '7a1f28327d2a3b679f9455c843d850b8', url='https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz') + extends('python') + depends_on('mpi') + + def install(self, spec, prefix): + with working_dir('source'): + python('setup.py', 'install', '--prefix=%s' % prefix) -- cgit v1.2.3-70-g09d2