From 9a4b86cd49505cc4a1181d0aaae0d44204a03965 Mon Sep 17 00:00:00 2001 From: Douglas Duckworth Date: Tue, 16 May 2017 10:42:37 -0400 Subject: added meme package (#4257) * added albacore package as well as dependency py-ont-fast5-api * added py-cutadapt and dependency py-xopen * made more changes to albacore and cutadapt as well as dependencies * made changes again per @adamjstewart * fixed by python n00b errors i think * fixed? * tw=79 * made changes to py-ont-fast5-api ont-albacore * removed bad characters * albacore requires setuptools as build and run dependency * added vmd * added back albacore * removed vmd package * added meme software * libz is only needed as link depedency for meme * added libxml2 libxslt libgcrypt as link dependencies --- var/spack/repos/builtin/packages/meme/package.py | 43 ++++++++++++++++++++++++ 1 file changed, 43 insertions(+) create mode 100644 var/spack/repos/builtin/packages/meme/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/meme/package.py b/var/spack/repos/builtin/packages/meme/package.py new file mode 100644 index 0000000000..ca7554c565 --- /dev/null +++ b/var/spack/repos/builtin/packages/meme/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Meme(AutotoolsPackage): + """The MEME Suite allows the biologist to discover novel motifs in + collections of unaligned nucleotide or protein sequences, and to perform a + wide variety of other motif-based analyses.""" + + homepage = "http://meme-suite.org" + url = "http://meme-suite.org/meme-software/4.11.4/meme_4.11.4.tar.gz" + + version('4.11.4', '371f513f82fa0888205748e333003897') + + depends_on('zlib', type=('link')) + depends_on('libxml2', type=('link')) + depends_on('libxslt', type=('link')) + depends_on('libgcrypt', type=('link')) + depends_on('perl', type=('build', 'run')) + depends_on('python@2.7:', type=('build', 'run')) -- cgit v1.2.3-60-g2f50