From 9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Fri, 11 Aug 2017 17:25:26 -0500 Subject: mpest: new package (#5064) * mpest: new package * adding architecture env var and making more version-flexible * fixing environment * fixed build directory * getting rid of duplicated code --- var/spack/repos/builtin/packages/mpest/package.py | 50 +++++++++++++++++++++++ 1 file changed, 50 insertions(+) create mode 100644 var/spack/repos/builtin/packages/mpest/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/mpest/package.py b/var/spack/repos/builtin/packages/mpest/package.py new file mode 100644 index 0000000000..a00eb37bb8 --- /dev/null +++ b/var/spack/repos/builtin/packages/mpest/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mpest(MakefilePackage): + """MP-EST estimates species trees from a set of gene trees by maximizing + a pseudo-likelihood function.""" + + homepage = "http://faculty.franklin.uga.edu/lliu/content/mp-est" + url = "https://faculty.franklin.uga.edu/lliu/sites/faculty.franklin.uga.edu.lliu/files/mpest_1.5.zip" + + version('1.5', 'f176d5301aa26567918664e5e30027d1') + + @property + def build_directory(self): + return join_path('mpest_{0}'.format(self.version), 'src') + + def install(self, spec, prefix): + with working_dir(self.build_directory): + mkdirp(prefix.bin) + install('mpest', prefix.bin) + + def setup_environment(self, spack_env, run_env): + if self.spec.satisfies('platform=darwin'): + spack_env.set('ARCHITECTURE', 'mac') + else: + spack_env.set('ARCHITECTURE', 'unix') -- cgit v1.2.3-70-g09d2