From b12fd4e8319abbd40034c7c3ec2bf030e423cc04 Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Wed, 16 Aug 2017 13:13:38 -0500 Subject: phylip: new package (#5121) --- var/spack/repos/builtin/packages/phylip/package.py | 45 ++++++++++++++++++++++ 1 file changed, 45 insertions(+) create mode 100644 var/spack/repos/builtin/packages/phylip/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/phylip/package.py b/var/spack/repos/builtin/packages/phylip/package.py new file mode 100644 index 0000000000..39bcd3c1e5 --- /dev/null +++ b/var/spack/repos/builtin/packages/phylip/package.py @@ -0,0 +1,45 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Phylip(Package): + """PHYLIP (the PHYLogeny Inference Package) is a package of programs for + inferring phylogenies (evolutionary trees).""" + + homepage = "http://evolution.genetics.washington.edu/phylip/" + url = "http://evolution.gs.washington.edu/phylip/download/phylip-3.696.tar.gz" + + version('3.696', 'dbe5abc26f6089ead3dba41c2db526ee') + + def install(self, spec, prefix): + with working_dir('src'): + if self.spec.satisfies('platform=darwin'): + make('all', '-f', 'Makefile.osx') + make('put', '-f', 'Makefile.osx') + else: + make('all', '-f', 'Makefile.unx') + make('put', '-f', 'Makefile.unx') + install_tree('exe', prefix.bin) -- cgit v1.2.3-60-g2f50