From b5d578a5e183f88ba48b73d2271c95ea49a6567a Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Mon, 14 May 2018 11:10:19 -0500 Subject: Aegean: new package (#8113) * aegean: new package * genometools: set dependent env for aegean --- var/spack/repos/builtin/packages/aegean/package.py | 43 ++++++++++++++++++++++ .../repos/builtin/packages/genometools/package.py | 3 ++ 2 files changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/aegean/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/aegean/package.py b/var/spack/repos/builtin/packages/aegean/package.py new file mode 100644 index 0000000000..8ec71982e5 --- /dev/null +++ b/var/spack/repos/builtin/packages/aegean/package.py @@ -0,0 +1,43 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Aegean(MakefilePackage): + """The AEGeAn Toolkit is designed for the Analysis and Evaluation of + Genome Annotations. The toolkit includes a variety of analysis programs + as well as a C library whose API provides access to AEGeAn's core + functions and data structures.""" + + homepage = "http://brendelgroup.github.io/AEGeAn/" + url = "https://github.com/BrendelGroup/AEGeAn/archive/v0.15.2.tar.gz" + + version('0.15.2', 'd7d73f5f132ff52340975b636564e949') + + depends_on('genometools') + + def edit(self, spec, prefix): + makefile = FileFilter('Makefile') + makefile.filter('/usr/local', prefix) diff --git a/var/spack/repos/builtin/packages/genometools/package.py b/var/spack/repos/builtin/packages/genometools/package.py index e08a97b9b4..86e092e7b0 100644 --- a/var/spack/repos/builtin/packages/genometools/package.py +++ b/var/spack/repos/builtin/packages/genometools/package.py @@ -43,3 +43,6 @@ class Genometools(MakefilePackage): def install(self, spec, prefix): make('install', 'prefix=%s' % prefix) + + def setup_dependent_environment(self, spack_env, run_env, dependent_spec): + spack_env.set('CPATH', self.prefix.include.genometools) -- cgit v1.2.3-70-g09d2