From b78c198b623b9107352b8aa2b30c15659bd0ead3 Mon Sep 17 00:00:00 2001 From: Levi Baber Date: Fri, 10 Aug 2018 15:01:12 -0500 Subject: r-fastcluster: new package (#8934) * r-fastcluster: new package * r-fastcluster: add list_url --- .../builtin/packages/r-fastcluster/package.py | 46 ++++++++++++++++++++++ 1 file changed, 46 insertions(+) create mode 100644 var/spack/repos/builtin/packages/r-fastcluster/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/r-fastcluster/package.py b/var/spack/repos/builtin/packages/r-fastcluster/package.py new file mode 100644 index 0000000000..7a1e20f00c --- /dev/null +++ b/var/spack/repos/builtin/packages/r-fastcluster/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RFastcluster(RPackage): + """This is a two-in-one package which provides interfaces to both R + and 'Python'. It implements fast hierarchical, agglomerative + clustering routines. Part of the functionality is designed as drop-in + replacement for existing routines: linkage() in the 'SciPy' package + 'scipy.cluster.hierarchy', hclust() in R's 'stats' package, and the + 'flashClust' package. It provides the same functionality with the + benefit of a much faster implementation. Moreover, there are + memory-saving routines for clustering of vector data, which go beyond + what the existing packages provide. For information on how to install + the 'Python' files, see the file INSTALL in the source distribution.""" + + homepage = "http://danifold.net/fastcluster.html" + url = "https://cran.r-project.org/src/contrib/fastcluster_1.1.25.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/fastcluster/" + + version('1.1.25', sha256='f3661def975802f3dd3cec5b2a1379f3707eacff945cf448e33aec0da1ed4205') + + depends_on('r@3.0.0:', type=('build', 'run')) -- cgit v1.2.3-60-g2f50