From ba81ef50f56126a3d01184d09f24dfac82dae084 Mon Sep 17 00:00:00 2001
From: George Young <A-N-Other@users.noreply.github.com>
Date: Mon, 18 Sep 2023 17:37:21 +0100
Subject: cpat: new package @3.0.4 (#40022)
* cpat: new package @3.0.4
* Update package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
---
var/spack/repos/builtin/packages/cpat/package.py | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
create mode 100644 var/spack/repos/builtin/packages/cpat/package.py
(limited to 'var')
diff --git a/var/spack/repos/builtin/packages/cpat/package.py b/var/spack/repos/builtin/packages/cpat/package.py
new file mode 100644
index 0000000000..ef6415bfba
--- /dev/null
+++ b/var/spack/repos/builtin/packages/cpat/package.py
@@ -0,0 +1,24 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Cpat(PythonPackage):
+ """CPAT is an alignment-free method to predict RNA coding potential using four sequence
+ features"""
+
+ homepage = "https://cpat.readthedocs.io/"
+ pypi = "CPAT/CPAT-3.0.4.tar.gz"
+
+ version("3.0.4", sha256="6d832f20729f8fc814384a27a4fcebcf81b11c0e6d80a404b4c4860d17e7d935")
+
+ depends_on("py-setuptools", type="build")
+ depends_on("py-nose@0.10.4:", type="build")
+ depends_on("py-cython@0.17:", type="build")
+ depends_on("py-numpy", type=("build", "run"))
+ depends_on("py-pysam", type=("build", "run"))
+
+ depends_on("r", type="run")
--
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