From c96f93b2a3318e05ee6774afd5ebbdae4763fc2e Mon Sep 17 00:00:00 2001
From: snehring <7978778+snehring@users.noreply.github.com>
Date: Thu, 22 Jun 2023 16:50:11 -0500
Subject: Emblmygff3 (#38515)

* py-bcbio-gff: adding new version 0.7.0

* emblmygff3: adding new package

* emblmygff3: adding py-setuptools dep
---
 .../repos/builtin/packages/emblmygff3/package.py   | 28 ++++++++++++++++++++++
 .../repos/builtin/packages/py-bcbio-gff/package.py |  1 +
 2 files changed, 29 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/emblmygff3/package.py

(limited to 'var')

diff --git a/var/spack/repos/builtin/packages/emblmygff3/package.py b/var/spack/repos/builtin/packages/emblmygff3/package.py
new file mode 100644
index 0000000000..7803efca76
--- /dev/null
+++ b/var/spack/repos/builtin/packages/emblmygff3/package.py
@@ -0,0 +1,28 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class Emblmygff3(PythonPackage):
+    """
+    EMBLmyGFF3 converts an assembly in FASTA format along with associated
+    annotation in GFF3 format into the EMBL flat file format which is the
+    required format for submitting annotated assemblies to ENA.
+    """
+
+    homepage = "https://github.com/NBISweden/EMBLmyGFF3"
+    url = "https://github.com/NBISweden/EMBLmyGFF3/archive/refs/tags/v2.2.tar.gz"
+
+    maintainers("snehring")
+
+    version("2.2", sha256="225b2b50da9064f779e164b2859506d7540d11fa78f7d41b5c0d94f02f7845c5")
+    version("2.1", sha256="64aef403bc64088eca504b69acffb3fb16ec4448cd3d6c9692b7baf276b92fd2")
+
+    depends_on("py-setuptools", type="build")
+    depends_on("python@3.8.0:", type=("build", "run"))
+    depends_on("py-biopython@1.78:", type=("build", "run"))
+    depends_on("py-bcbio-gff@0.6.4:", type=("build", "run"))
+    depends_on("py-numpy@1.22:", type=("build", "run"))
diff --git a/var/spack/repos/builtin/packages/py-bcbio-gff/package.py b/var/spack/repos/builtin/packages/py-bcbio-gff/package.py
index 717cf1d165..60b9ea00d6 100644
--- a/var/spack/repos/builtin/packages/py-bcbio-gff/package.py
+++ b/var/spack/repos/builtin/packages/py-bcbio-gff/package.py
@@ -12,6 +12,7 @@ class PyBcbioGff(PythonPackage):
 
     pypi = "bcbio-gff/bcbio-gff-0.6.2.tar.gz"
 
+    version("0.7.0", sha256="f7b3922ee274106f8716703f41f05a1795aa9d73e903f4e481995ed8f5f65d2d")
     version("0.6.2", sha256="c682dc46a90e9fdb124ab5723797a5f71b2e3534542ceff9f6572b64b9814e68")
 
     depends_on("py-setuptools", type="build")
-- 
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