From d423f85fed76c27807ece2396731c07bc9d4a38f Mon Sep 17 00:00:00 2001 From: Audrey Thoma Date: Wed, 16 Aug 2017 19:36:29 -0500 Subject: dialign-tx: new package (#5126) * dialign-tx: new package * utilizing build_directory variable * forgot one --- .../repos/builtin/packages/dialign-tx/package.py | 50 ++++++++++++++++++++++ 1 file changed, 50 insertions(+) create mode 100644 var/spack/repos/builtin/packages/dialign-tx/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/dialign-tx/package.py b/var/spack/repos/builtin/packages/dialign-tx/package.py new file mode 100644 index 0000000000..ccb094605e --- /dev/null +++ b/var/spack/repos/builtin/packages/dialign-tx/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class DialignTx(MakefilePackage): + """DIALIGN-TX: greedy and progressive approaches for segment-based + multiple sequence alignment""" + + homepage = "http://dialign-tx.gobics.de/" + url = "http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz" + + version('1.0.2', '8ccfb1d91136157324d1e513f184ca29') + + build_directory = 'source' + + conflicts('%gcc@6:') + + def edit(self, spec, prefix): + with working_dir(self.build_directory): + makefile = FileFilter('Makefile') + makefile.filter(' -march=i686 ', ' ') + makefile.filter('CC=gcc', 'CC=%s' % spack_cc) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + with working_dir(self.build_directory): + install('dialign-tx', prefix.bin) -- cgit v1.2.3-70-g09d2