From ef06b9db5bb2099dfd6161d763953612eec1314a Mon Sep 17 00:00:00 2001
From: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Date: Wed, 30 Nov 2022 01:37:50 +0100
Subject: py-bidscoin, py-multiecho: add new packages (#34168)

---
 .../repos/builtin/packages/py-bidscoin/package.py  | 33 ++++++++++++++++++++++
 .../repos/builtin/packages/py-multiecho/package.py | 22 +++++++++++++++
 2 files changed, 55 insertions(+)
 create mode 100644 var/spack/repos/builtin/packages/py-bidscoin/package.py
 create mode 100644 var/spack/repos/builtin/packages/py-multiecho/package.py

(limited to 'var')

diff --git a/var/spack/repos/builtin/packages/py-bidscoin/package.py b/var/spack/repos/builtin/packages/py-bidscoin/package.py
new file mode 100644
index 0000000000..8012bd3123
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-bidscoin/package.py
@@ -0,0 +1,33 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyBidscoin(PythonPackage):
+    """Converts and organises raw MRI data-sets according to the Brain Imaging
+    Data Structure (BIDS)."""
+
+    homepage = "https://github.com/Donders-Institute/bidscoin"
+    pypi = "bidscoin/bidscoin-3.7.4.tar.gz"
+
+    version("3.7.4", sha256="efa32238fb7b75e533e7f5cc318ad5a703716d291985435d43f1de4f18402517")
+
+    depends_on("python@3.8:", type=("build", "run"))
+    depends_on("py-setuptools", type="build")
+    depends_on("py-pytest-runner", type="build")
+
+    depends_on("py-pandas", type=("build", "run"))
+    depends_on("py-matplotlib", type=("build", "run"))
+    depends_on("py-numpy", type=("build", "run"))
+    depends_on("py-pydicom@2:", type=("build", "run"))
+    depends_on("py-pyqt5@5.12.1:", type=("build", "run"))
+    depends_on("py-ruamel-yaml@0.15.35:", type=("build", "run"))
+    depends_on("py-coloredlogs", type=("build", "run"))
+    depends_on("py-tqdm", type=("build", "run"))
+    depends_on("py-multiecho@0.25:", type=("build", "run"))
+    depends_on("py-python-dateutil", type=("build", "run"))
+    depends_on("py-nibabel", type=("build", "run"))
+    depends_on("dcm2niix", type=("build", "run"))
diff --git a/var/spack/repos/builtin/packages/py-multiecho/package.py b/var/spack/repos/builtin/packages/py-multiecho/package.py
new file mode 100644
index 0000000000..dba1e76093
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-multiecho/package.py
@@ -0,0 +1,22 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyMultiecho(PythonPackage):
+    """Combine multi-echoes from a multi-echo fMRI acquisition."""
+
+    homepage = "https://github.com/Donders-Institute/multiecho"
+    pypi = "multiecho/multiecho-0.28.tar.gz"
+
+    version("0.28", sha256="d0459bd03398547116d8e989b2d2b7922af0ae7ae77e233794dd7253a2abced3")
+
+    depends_on("python@3.6:3.9", type=("build", "run"))
+    depends_on("py-setuptools", type="build")
+
+    depends_on("py-coloredlogs", type=("build", "run"))
+    depends_on("py-numpy", type=("build", "run"))
+    depends_on("py-nibabel", type=("build", "run"))
-- 
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