From f9947333ca99cadebe98b39236e7eaa542d3ee42 Mon Sep 17 00:00:00 2001 From: Justin Stanley Date: Fri, 1 Mar 2019 10:09:23 -0600 Subject: bridger: new package at 2014-12-01 (#10611) --- .../repos/builtin/packages/bridger/package.py | 31 ++++++++++++++++++++++ 1 file changed, 31 insertions(+) create mode 100644 var/spack/repos/builtin/packages/bridger/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/bridger/package.py b/var/spack/repos/builtin/packages/bridger/package.py new file mode 100644 index 0000000000..4071046478 --- /dev/null +++ b/var/spack/repos/builtin/packages/bridger/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +from os import symlink + + +class Bridger(MakefilePackage): + """Bridger : An Efficient De novo Transcriptome Assembler For + RNA-Seq Data""" + + homepage = "https://sourceforge.net/projects/rnaseqassembly/" + url = "https://downloads.sourceforge.net/project/rnaseqassembly/Bridger_r2014-12-01.tar.gz" + + version('2014-12-01', sha256='8fbec8603ea8ad2162cbd0c658e4e0a4af6453bdb53310b4b7e0d112e40b5737') + + depends_on('boost') + depends_on('perl', type='run') + + def install(self, spec, prefix): + # bridger depends very much on perl scripts/etc in the source tree + install_path = join_path(prefix, 'usr/local/bridger') + mkdirp(install_path) + install_tree('.', install_path) + + # symlink the init script to /bin + mkdirp(prefix.bin) + symlink(join_path(install_path, 'Bridger.pl'), + join_path(prefix.bin, 'Bridger.pl')) -- cgit v1.2.3-70-g09d2