From ffbc4f199e602b141451ee81d2db59831a35cf18 Mon Sep 17 00:00:00 2001 From: Eric Martin Date: Tue, 12 Mar 2019 21:30:30 -0500 Subject: fqtrim: Create new package (#10861) --- var/spack/repos/builtin/packages/fqtrim/package.py | 25 ++++++++++++++++++++++ 1 file changed, 25 insertions(+) create mode 100644 var/spack/repos/builtin/packages/fqtrim/package.py (limited to 'var') diff --git a/var/spack/repos/builtin/packages/fqtrim/package.py b/var/spack/repos/builtin/packages/fqtrim/package.py new file mode 100644 index 0000000000..fb02c9c89c --- /dev/null +++ b/var/spack/repos/builtin/packages/fqtrim/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Fqtrim(MakefilePackage): + """fqtrim is a versatile stand-alone utility that can be used to trim + adapters, poly-A tails, terminal unknown bases (Ns) and low quality 3' + regions in reads from high-throughput next-generation sequencing + machines.""" + + homepage = "https://ccb.jhu.edu/software/fqtrim/" + url = "http://ccb.jhu.edu/software/fqtrim/dl/fqtrim-0.9.7.tar.gz" + + version('0.9.7', sha256='4951538f69dde14a23fc4841ff020434d26eb9622c4e06b43c068c702aa3d0d6') + + def build(self, spec, prefix): + make('release') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('fqtrim', prefix.bin) -- cgit v1.2.3-70-g09d2