# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Entrezdirect(Package):
    """Entrez Direct (EDirect) provides access to the NCBI's suite of
    interconnected databases (publication, sequence, structure,
    gene, variation, expression, etc.) from a UNIX terminal window."""

    homepage = "https://www.ncbi.nlm.nih.gov/books/NBK179288/"

    version(
        "10.7.20190114", sha256="4152749e6a3aac71a64e9367527428714ed16cf1fb6c7eff1298cca9ef144c0d"
    )

    depends_on("perl", type="run")
    depends_on("perl-html-parser", type="run")
    depends_on("perl-libwww-perl", type="run")
    depends_on("perl-lwp-protocol-https", type="run")
    depends_on("perl-http-message", type="run")
    depends_on("perl-xml-simple", type="run")

    def url_for_version(self, ver):
        pfx = "ftp://ftp.ncbi.nlm.nih.gov/entrez/entrezdirect/versions/"
        return pfx + "{0}/edirect-{0}.tar.gz".format(ver.dotted)

    def install(self, spec, prefix):
        install_tree(".", prefix.bin)