# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Fastqvalidator(MakefilePackage):
    """The fastQValidator validates the format of fastq files."""

    homepage = "https://genome.sph.umich.edu/wiki/FastQValidator"
    git = "https://github.com/statgen/fastQValidator.git"

    version("2017-01-10", commit="6d619a34749e9d33c34ef0d3e0e87324ca77f320")

    resource(
        name="libStatGen",
        git="https://github.com/statgen/libStatGen.git",
        commit="9db9c23e176a6ce6f421a3c21ccadedca892ac0c",
    )

    depends_on("zlib-api", type="link")
    patch("chromosome.patch", when="@2017-01-10", working_dir="libStatGen")

    @property
    def build_targets(self):
        return ["LIB_PATH_GENERAL={0}".format(join_path(self.stage.source_path, "libStatGen"))]

    @property
    def install_targets(self):
        return [
            "INSTALLDIR={0}".format(self.prefix.bin),
            "LIB_PATH_GENERAL={0}".format(join_path(self.stage.source_path, "libStatGen")),
            "install",
        ]