--- a/etc/fslconf/fslpython_install.sh 2020-07-25 09:20:04.000000000 -0500 +++ b/etc/fslconf/fslpython_install.sh 2020-11-09 20:12:59.458736979 -0600 @@ -204,19 +204,19 @@ # - https://github.com/conda/conda/issues/8804 # Try to make downloads more resilient -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_read_timeout_secs 240 -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_connect_timeout_secs 20 -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_max_retries 10 -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_backoff_factor 5 -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set safety_checks warn +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_read_timeout_secs 240 +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_connect_timeout_secs 20 +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_max_retries 10 +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set remote_backoff_factor 5 +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set safety_checks warn # Channel priority: # - conda-forge (highest priority) # - defaults (gets automatically added on the first call) # - fsl (lowest priority) -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set channel_priority strict -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --add channels conda-forge -"${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --append channels https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/channel +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --set channel_priority strict +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --add channels conda-forge +"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" config --file "${miniconda_root_dir}"/.condarc --append channels https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/channel ############################## @@ -229,7 +229,7 @@ if [ ${quiet} -ne 1 ]; then echo "Stage 2" fi -FSLDIR=$fsl_dir "${miniconda_bin_dir}/conda" env create -v \ +FSLDIR=$fsl_dir "${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda-env" create -v \ -f "${script_dir}/fslpython_environment.yml" \ 2>> "${miniconda_install_log}" | \ ${script_dir}/progress.sh 133 ${quiet} 1>> "${miniconda_install_log}"