diff -ru a/etc/fslconf/fslpython_install.sh b/etc/fslconf/fslpython_install.sh
--- a/etc/fslconf/fslpython_install.sh	2021-07-15 10:05:03.000000000 +0000
+++ b/etc/fslconf/fslpython_install.sh	2021-11-01 01:01:03.088119423 +0000
@@ -204,19 +204,19 @@
 #  - https://github.com/conda/conda/issues/8804
 
 # Try to make downloads more resilient
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_read_timeout_secs    240
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_connect_timeout_secs 20
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_max_retries          10
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_backoff_factor       5
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set safety_checks               warn
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_read_timeout_secs    240
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_connect_timeout_secs 20
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_max_retries          10
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set remote_backoff_factor       5
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set safety_checks               warn
 
 # Channel priority:
 #  - conda-forge (highest priority)
 #  - defaults (gets automatically added on the first call)
 #  - fsl (lowest priority)
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set    channel_priority strict
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --add    channels         conda-forge
-"${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --append channels         https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/channel
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --set    channel_priority strict
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --add    channels         conda-forge
+"${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda"  config --file "${miniconda_root_dir}"/.condarc --append channels         https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/channel
 
 
 ##############################
@@ -235,7 +235,7 @@
 # different on linux. Also is likely to need
 # updating whenever the fslpython environment
 # specification is changed.
-FSLDIR=$fsl_dir "${miniconda_bin_dir}/conda" env create \
+FSLDIR=$fsl_dir "${miniconda_bin_dir}/python" "${miniconda_bin_dir}/conda" env create \
     -f "${script_dir}/fslpython_environment.yml" \
     2>> "${miniconda_install_log}" | \
     ${script_dir}/progress.sh 400 ${quiet} 1>> "${miniconda_install_log}"
Only in b/etc/fslconf: fslpython_install.sh.orig
Only in b/etc/fslconf: fslpython_install.sh.rej