############################################################################## # Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. # Produced at the Lawrence Livermore National Laboratory. # # This file is part of Spack. # Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. # LLNL-CODE-647188 # # For details, see https://github.com/llnl/spack # Please also see the LICENSE file for our notice and the LGPL. # # This program is free software; you can redistribute it and/or modify # it under the terms of the GNU Lesser General Public License (as # published by the Free Software Foundation) version 2.1, February 1999. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and # conditions of the GNU Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with this program; if not, write to the Free Software # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA ############################################################################## from spack import * import shutil class Hdf5(Package): """HDF5 is a data model, library, and file format for storing and managing data. It supports an unlimited variety of datatypes, and is designed for flexible and efficient I/O and for high volume and complex data. """ homepage = "http://www.hdfgroup.org/HDF5/" url = "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.13/src/hdf5-1.8.13.tar.gz" list_url = "http://www.hdfgroup.org/ftp/HDF5/releases" list_depth = 3 version('1.10.0-patch1', '9180ff0ef8dc2ef3f61bd37a7404f295') version('1.10.0', 'bdc935337ee8282579cd6bc4270ad199') version('1.8.16', 'b8ed9a36ae142317f88b0c7ef4b9c618', preferred=True) version('1.8.15', '03cccb5b33dbe975fdcd8ae9dc021f24') version('1.8.13', 'c03426e9e77d7766944654280b467289') variant('debug', default=False, description='Builds a debug version of the library') variant('shared', default=True, description='Builds a shared version of the library') variant('cxx', default=True, description='Enable C++ support') variant('fortran', default=True, description='Enable Fortran support') variant('mpi', default=False, description='Enable MPI support') variant('szip', default=False, description='Enable szip support') variant('threadsafe', default=False, description='Enable thread-safe capabilities') depends_on("mpi", when='+mpi') depends_on("szip", when='+szip') depends_on("zlib") def validate(self, spec): """ Checks if incompatible variants have been activated at the same time :param spec: spec of the package :raises RuntimeError: in case of inconsistencies """ if '+fortran' in spec and not self.compiler.fc: msg = 'cannot build a fortran variant without a fortran compiler' raise RuntimeError(msg) if '+threadsafe' in spec and ('+cxx' in spec or '+fortran' in spec): raise RuntimeError("cannot use variant +threadsafe with either +cxx or +fortran") def install(self, spec, prefix): self.validate(spec) # Handle compilation after spec validation extra_args = [] # Always enable this option. This does not actually enable any # features: it only *allows* the user to specify certain # combinations of other arguments. Enabling it just skips a # sanity check in configure, so this doesn't merit a variant. extra_args.append("--enable-unsupported") if spec.satisfies('@1.10:'): if '+debug' in spec: extra_args.append('--enable-build-mode=debug') else: extra_args.append('--enable-build-mode=production') else: if '+debug' in spec: extra_args.append('--enable-debug=all') else: extra_args.append('--enable-production') if '+shared' in spec: extra_args.append('--enable-shared') else: extra_args.append('--enable-static-exec') if '+cxx' in spec: extra_args.append('--enable-cxx') if '+fortran' in spec: extra_args.append('--enable-fortran') # '--enable-fortran2003' no longer exists as of version 1.10.0 if spec.satisfies('@:1.8.16'): extra_args.append('--enable-fortran2003') if '+mpi' in spec: # The HDF5 configure script warns if cxx and mpi are enabled # together. There doesn't seem to be a real reason for this, except # that parts of the MPI interface are not accessible via the C++ # interface. Since they are still accessible via the C interface, # this is not actually a problem. extra_args.extend([ "--enable-parallel", "CC=%s" % join_path(spec['mpi'].prefix.bin, "mpicc"), ]) if '+cxx' in spec: extra_args.append("CXX=%s" % join_path(spec['mpi'].prefix.bin, "mpic++")) if '+fortran' in spec: extra_args.append("FC=%s" % join_path(spec['mpi'].prefix.bin, "mpifort")) if '+szip' in spec: extra_args.append("--with-szlib=%s" % spec['szip'].prefix) if '+threadsafe' in spec: extra_args.extend([ '--enable-threadsafe', '--disable-hl', ]) configure( "--prefix=%s" % prefix, "--with-zlib=%s" % spec['zlib'].prefix, *extra_args) make() make("install") self.check_install(spec) def check_install(self, spec): "Build and run a small program to test the installed HDF5 library" print "Checking HDF5 installation..." checkdir = "spack-check" with working_dir(checkdir, create=True): source = r""" #include #include #include int main(int argc, char **argv) { unsigned majnum, minnum, relnum; herr_t herr = H5get_libversion(&majnum, &minnum, &relnum); assert(!herr); printf("HDF5 version %d.%d.%d %u.%u.%u\n", H5_VERS_MAJOR, H5_VERS_MINOR, H5_VERS_RELEASE, majnum, minnum, relnum); return 0; } """ expected = """\ HDF5 version {version} {version} """.format(version=str(spec.version)) with open("check.c", 'w') as f: f.write(source) if '+mpi' in spec: cc = which(join_path(spec['mpi'].prefix.bin, "mpicc")) else: cc = which('cc') # TODO: Automate these path and library settings cc('-c', "-I%s" % join_path(spec.prefix, "include"), "check.c") cc('-o', "check", "check.o", "-L%s" % join_path(spec.prefix, "lib"), "-lhdf5", "-lz") try: check = Executable('./check') output = check(return_output=True) except: output = "" success = output == expected if not success: print "Produced output does not match expected output." print "Expected output:" print '-'*80 print expected print '-'*80 print "Produced output:" print '-'*80 print output print '-'*80 raise RuntimeError("HDF5 install check failed") shutil.rmtree(checkdir) def url_for_version(self, version): v = str(version) if version == Version("1.2.2"): return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + ".tar.gz" elif version < Version("1.7"): return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + version.up_to(2) + "/hdf5-" + v + ".tar.gz" elif version < Version("1.10"): return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + v + "/src/hdf5-" + v + ".tar.gz" else: return "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-" + version.up_to(2) + "/hdf5-" + v + "/src/hdf5-" + v + ".tar.gz"