# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Kentutils(MakefilePackage):
    """Jim Kent command line bioinformatic utilities"""

    homepage = "https://github.com/ENCODE-DCC/kentUtils"
    git = "https://github.com/ENCODE-DCC/kentUtils.git"

    version("302.1", commit="d8376c5d52a161f2267346ed3dc94b5dce74c2f9")

    depends_on("libpng")
    depends_on("openssl")

    # Actually depends on mysql, but mariadb works for now until mysql is
    # available
    depends_on("mariadb")

    conflicts("%cce")
    conflicts("%apple-clang")
    conflicts("%clang")
    conflicts("%intel")
    conflicts("%nag")
    conflicts("%pgi")
    conflicts("%xl")
    conflicts("%xl_r")

    def install(self, spec, prefix):
        install_tree("bin", prefix.bin)