# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Lastz(MakefilePackage):
    """LASTZ is a program for aligning DNA sequences, a pairwise aligner."""

    homepage = "https://lastz.github.io/lastz"
    url = "https://github.com/lastz/lastz/archive/1.04.00.tar.gz"

    license("MIT")

    version("1.04.22", sha256="4c829603ba4aed7ddf64255b528cd88850e4557382fca29580d3576c25c5054a")
    version("1.04.15", sha256="46a5cfb1fd41911a36fce5d3a2721ebfec9146952943b302e78b0dfffddd77f8")
    version("1.04.03", sha256="c58ed8e37c4b0e82492b3a2b3e12447a3c40286fb8358906d19f10b0a713e9f4")
    version("1.04.00", sha256="a4c2c7a77430387e96dbc9f5bdc75874334c672be90f5720956c0f211abf9f5a")

    # Ref: https://github.com/lastz/lastz/commit/20aa14f483265b4eac97f25aca666c708b9655e4
    patch("sequences.c.patch", when="@:1.04.03")

    # set compile commands for each compiler
    def edit(self, spec, prefix):
        filter_file("gcc", spack_cc, "src/Makefile")

    def install(self, spec, prefix):
        make("install", "LASTZ_INSTALL={0}".format(prefix.bin))