# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class Mafft(Package):
    """MAFFT is a multiple sequence alignment program for unix-like
       operating systems.  It offers a range of multiple alignment
       methods, L-INS-i (accurate; for alignment of <~200 sequences),
       FFT-NS-2 (fast; for alignment of <~30,000 sequences), etc."""

    homepage = "https://mafft.cbrc.jp/alignment/software/index.html"
    url      = "https://mafft.cbrc.jp/alignment/software/mafft-7.221-with-extensions-src.tgz"

    version('7.481', sha256='7397f1193048587a3d887e46a353418e67849f71729764e8195b218e3453dfa2')
    version('7.475', sha256='bb6973ae089ea18cfbd3861a5b9d2c8b7e1543a1fdc78ac2d7cd8dbe3443f319')
    version('7.453', sha256='8b2f0d6249c575f80cd51278ab45dd149b8ac9b159adac20fd1ddc7a6722af11')
    version('7.407', sha256='1840b51a0b93f40b4d6076af996ee46396428d8dbaf7ba1d847abff9cb1463e5')
    version('7.221', sha256='0bc78111966d9b00ddfa14fa217fa5bb0c593a558674a13f02dca7bcd51f7fcf')

    def install(self, spec, prefix):
        with working_dir('core'):
            make('PREFIX=%s' % prefix)
            make('PREFIX=%s' % prefix, 'install')
        with working_dir('extensions'):
            make('PREFIX=%s' % prefix)
            make('PREFIX=%s' % prefix, 'install')