# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * import os class Megadock(MakefilePackage, CudaPackage): """an ultra-high-performance protein-protein docking for heterogeneous supercomputers""" homepage = "http://www.bi.cs.titech.ac.jp/megadock/" url = "http://www.bi.cs.titech.ac.jp/megadock/archives/megadock-4.0.3.tgz" version('4.0.3', sha256='c1409a411555f4f7b4eeeda81caf622d8a28259a599ea1d2181069c55f257664') variant('mpi', description='Enable MPI', default=False) depends_on('fftw') depends_on('mpi', when='+mpi') def edit(self, spec, prefix): # point cuda samples relative to cuda installation filter_file('/opt/cuda/6.5/samples', '$(CUDA_INSTALL_PATH)/samples', 'Makefile', string=True) # need to link calcrg to compiler's math impl # libm seems to be present in most compilers mathlib = '-lm' # prefer libimf with intel if '%intel' in spec: mathlib = '-limf' filter_file('-o calcrg', '%s -o calcrg' % mathlib, 'Makefile', string=True) # makefile has a weird var for cuda_arch, use conditionally if '+cuda' in spec: arch = spec.variants['cuda_arch'].value archflag = '' if arch[0] != 'none': archflag = '-arch=%s' % arch[0] filter_file('-arch=$(SM_VERSIONS)', archflag, 'Makefile', string=True) @property def build_targets(self): spec = self.spec targets = [ 'USE_GPU=%s' % ('1' if '+cuda' in spec else '0'), 'USE_MPI=%s' % ('1' if '+mpi' in spec else '0'), 'OMPFLAG=%s' % self.compiler.openmp_flag, 'CPPCOMPILER=c++', 'FFTW_INSTALL_PATH=%s' % self.spec['fftw'].prefix, ] if '+cuda' in spec: targets.append('CUDA_INSTALL_PATH=%s' % self.spec['cuda'].prefix) if '+mpi' in spec: targets.append('MPICOMPILER=%s' % self.spec['mpi'].mpicxx) return targets def install(self, spec, prefix): mkdirp(prefix.bin) for suffix in ['', '-gpu', '-dp', '-gpu-dp']: fn = 'megadock' + suffix if os.path.isfile(fn): install(fn, prefix.bin)