# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) import os import re import sys from spack import * class Mpich(AutotoolsPackage): """MPICH is a high performance and widely portable implementation of the Message Passing Interface (MPI) standard.""" homepage = "http://www.mpich.org" url = "http://www.mpich.org/static/downloads/3.0.4/mpich-3.0.4.tar.gz" git = "https://github.com/pmodels/mpich.git" list_url = "http://www.mpich.org/static/downloads/" list_depth = 1 maintainers = ['raffenet', 'yfguo'] executables = ['^mpichversion$'] version('develop', submodules=True) version('3.4.2', sha256='5c19bea8b84e8d74cca5f047e82b147ff3fba096144270e3911ad623d6c587bf') version('3.4.1', sha256='8836939804ef6d492bcee7d54abafd6477d2beca247157d92688654d13779727') version('3.4', sha256='ce5e238f0c3c13ab94a64936060cff9964225e3af99df1ea11b130f20036c24b') version('3.3.2', sha256='4bfaf8837a54771d3e4922c84071ef80ffebddbb6971a006038d91ee7ef959b9') version('3.3.1', sha256='fe551ef29c8eea8978f679484441ed8bb1d943f6ad25b63c235d4b9243d551e5') version('3.3', sha256='329ee02fe6c3d101b6b30a7b6fb97ddf6e82b28844306771fa9dd8845108fa0b') version('3.2.1', sha256='5db53bf2edfaa2238eb6a0a5bc3d2c2ccbfbb1badd79b664a1a919d2ce2330f1') version('3.2', sha256='0778679a6b693d7b7caff37ff9d2856dc2bfc51318bf8373859bfa74253da3dc') version('3.1.4', sha256='f68b5330e94306c00ca5a1c0e8e275c7f53517d01d6c524d51ce9359d240466b') version('3.1.3', sha256='afb690aa828467721e9d9ab233fe00c68cae2b7b930d744cb5f7f3eb08c8602c') version('3.1.2', sha256='37c3ba2d3cd3f4ea239497d9d34bd57a663a34e2ea25099c2cbef118c9156587') version('3.1.1', sha256='455ccfaf4ec724d2cf5d8bff1f3d26a958ad196121e7ea26504fd3018757652d') version('3.1', sha256='fcf96dbddb504a64d33833dc455be3dda1e71c7b3df411dfcf9df066d7c32c39') version('3.0.4', sha256='cf638c85660300af48b6f776e5ecd35b5378d5905ec5d34c3da7a27da0acf0b3') variant('hwloc', default=True, description='Use external hwloc package') variant('hydra', default=True, description='Build the hydra process manager') variant('romio', default=True, description='Enable ROMIO MPI I/O implementation') variant('verbs', default=False, description='Build support for OpenFabrics verbs.') variant('slurm', default=False, description='Enable SLURM support') variant('wrapperrpath', default=True, description='Enable wrapper rpath') variant( 'pmi', default='pmi', description='''PMI interface.''', values=('off', 'pmi', 'pmi2', 'pmix'), multi=False ) variant( 'device', default='ch4', description='''Abstract Device Interface (ADI) implementation. The ch4 device is in experimental state for versions before 3.4.''', values=('ch3', 'ch4'), multi=False ) variant( 'netmod', default='ofi', description='''Network module. Only single netmod builds are supported. For ch3 device configurations, this presumes the ch3:nemesis communication channel. ch3:sock is not supported by this spack package at this time.''', values=('tcp', 'mxm', 'ofi', 'ucx'), multi=False ) variant('pci', default=(sys.platform != 'darwin'), description="Support analyzing devices on PCI bus") variant('libxml2', default=True, description='Use libxml2 for XML support instead of the custom ' 'minimalistic implementation') variant('argobots', default=False, description='Enable Argobots support') variant('fortran', default=True, description='Enable Fortran support') provides('mpi@:3.1') provides('mpi@:3.0', when='@:3.1') provides('mpi@:2.2', when='@:1.2') provides('mpi@:2.1', when='@:1.1') provides('mpi@:2.0', when='@:1.0') filter_compiler_wrappers( 'mpicc', 'mpicxx', 'mpif77', 'mpif90', 'mpifort', relative_root='bin' ) # Fix using an external hwloc # See https://github.com/pmodels/mpich/issues/4038 # and https://github.com/pmodels/mpich/pull/3540 # landed in v3.4b1 v3.4a3 patch('https://github.com/pmodels/mpich/commit/8a851b317ee57366cd15f4f28842063d8eff4483.patch', sha256='eb982de3366d48cbc55eb5e0df43373a45d9f51df208abf0835a72dc6c0b4774', when='@3.3:3.3.99 +hwloc') # fix MPI_Barrier segmentation fault # see https://lists.mpich.org/pipermail/discuss/2016-May/004764.html # and https://lists.mpich.org/pipermail/discuss/2016-June/004768.html patch('mpich32_clang.patch', when='@3.2:3.2.0%clang') patch('mpich32_clang.patch', when='@3.2:3.2.0%apple-clang') # Fix SLURM node list parsing # See https://github.com/pmodels/mpich/issues/3572 # and https://github.com/pmodels/mpich/pull/3578 # Even though there is no version 3.3.0, we need to specify 3.3:3.3.0 in # the when clause, otherwise the patch will be applied to 3.3.1, too. patch('https://github.com/pmodels/mpich/commit/b324d2de860a7a2848dc38aefb8c7627a72d2003.patch', sha256='c7d4ecf865dccff5b764d9c66b6a470d11b0b1a5b4f7ad1ffa61079ad6b5dede', when='@3.3:3.3.0') # This patch for Libtool 2.4.2 enables shared libraries for NAG and is # applied by MPICH starting version 3.1. patch('nag_libtool_2.4.2_0.patch', when='@:3.0%nag') # This patch for Libtool 2.4.2 fixes the problem with '-pthread' flag and # enables convenience libraries for NAG. Starting version 3.1, the order of # checks for FC and F77 is changed, therefore we need to apply the patch in # two steps (the patch files can be merged once the support for versions # 3.1 and older is dropped). patch('nag_libtool_2.4.2_1.patch', when='@:3.1.3%nag') patch('nag_libtool_2.4.2_2.patch', when='@:3.1.3%nag') # This patch for Libtool 2.4.6 does the same as the previous two. The # problem is not fixed upstream yet and the upper version constraint is # given just to avoid application of the patch to the develop version. patch('nag_libtool_2.4.6.patch', when='@3.1.4:3.3%nag') depends_on('findutils', type='build') depends_on('pkgconfig', type='build') depends_on('hwloc@2.0.0:', when='@3.3: +hwloc') depends_on('libfabric', when='netmod=ofi') # The ch3 ofi netmod results in crashes with libfabric 1.7 # See https://github.com/pmodels/mpich/issues/3665 depends_on('libfabric@:1.6', when='device=ch3 netmod=ofi') depends_on('ucx', when='netmod=ucx') # The dependencies on libpciaccess and libxml2 come from the embedded # hwloc, which, before version 3.3, was used only for Hydra. depends_on('libpciaccess', when="@:3.2+hydra+pci") depends_on('libxml2', when='@:3.2+hydra+libxml2') # Starting with version 3.3, MPICH uses hwloc directly. depends_on('libpciaccess', when="@3.3:+pci") depends_on('libxml2', when='@3.3:+libxml2') # Starting with version 3.3, Hydra can use libslurm for nodelist parsing depends_on('slurm', when='+slurm') depends_on('pmix', when='pmi=pmix') # +argobots variant requires Argobots depends_on('argobots', when='+argobots') # building from git requires regenerating autotools files depends_on('automake@1.15:', when='@develop', type=("build")) depends_on('libtool@2.4.4:', when='@develop', type=("build")) depends_on("m4", when="@develop", type=("build")), depends_on("autoconf@2.67:", when='@develop', type=("build")) # building with "+hwloc' also requires regenerating autotools files depends_on('automake@1.15:', when='@3.3:3.3.99 +hwloc', type="build") depends_on('libtool@2.4.4:', when='@3.3:3.3.99 +hwloc', type="build") depends_on("m4", when="@3.3:3.3.99 +hwloc", type="build"), depends_on("autoconf@2.67:", when='@3.3:3.3.99 +hwloc', type="build") # MPICH's Yaksa submodule requires python to configure depends_on("python@3.0:", when="@develop", type="build") conflicts('device=ch4', when='@:3.2') conflicts('netmod=ofi', when='@:3.1.4') conflicts('netmod=ucx', when='device=ch3') conflicts('netmod=mxm', when='device=ch4') conflicts('netmod=mxm', when='@:3.1.3') conflicts('netmod=tcp', when='device=ch4') conflicts('pmi=pmi2', when='device=ch3 netmod=ofi') conflicts('pmi=pmix', when='device=ch3') conflicts('pmi=pmix', when='+hydra') # MPICH does not require libxml2 and libpciaccess for versions before 3.3 # when ~hydra is set: prevent users from setting +libxml2 and +pci in this # case to avoid generating an identical MPICH installation. conflicts('+pci', when='@:3.2~hydra') conflicts('+libxml2', when='@:3.2~hydra') # see https://github.com/pmodels/mpich/pull/5031 conflicts('%clang@:7', when='@3.4:3.4.1') @run_after('configure') def patch_cce(self): # Configure misinterprets output from the cce compiler # Patching configure instead should be possible, but a first # implementation failed in obscure ways that were not worth # tracking down when this worked if self.spec.satisfies('%cce'): filter_file('-L -L', '', 'config.lt', string=True) filter_file('-L -L', '', 'libtool', string=True) filter_file('-L -L', '', 'config.status', string=True) @classmethod def determine_version(cls, exe): output = Executable(exe)(output=str, error=str) match = re.search(r'MPICH Version:\s+(\S+)', output) return match.group(1) if match else None @classmethod def determine_variants(cls, exes, version): def get_spack_compiler_spec(path): spack_compilers = spack.compilers.find_compilers([path]) actual_compiler = None # check if the compiler actually matches the one we want for spack_compiler in spack_compilers: if os.path.dirname(spack_compiler.cc) == path: actual_compiler = spack_compiler break return actual_compiler.spec if actual_compiler else None def is_enabled(text): if text in set(['t', 'true', 'enabled', 'enable', 'with', 'yes', '1']): return True return False def is_disabled(text): if text in set(['f', 'false', 'disabled', 'disable', 'without', 'no', '0']): return True return False results = [] for exe in exes: variants = '' output = Executable(exe)(output=str, error=str) if re.search(r'--with-hwloc-prefix=embedded', output): variants += '~hwloc' if re.search(r'--with-pm=hydra', output): variants += '+hydra' else: variants += '~hydra' match = re.search(r'--(\S+)-romio', output) if match and is_enabled(match.group(1)): variants += '+romio' elif match and is_disabled(match.group(1)): variants += '~romio' if re.search(r'--with-ibverbs', output): variants += '+verbs' elif re.search(r'--without-ibverbs', output): variants += '~verbs' match = re.search(r'--enable-wrapper-rpath=(\S+)', output) if match and is_enabled(match.group(1)): variants += '+wrapperrpath' match = re.search(r'--enable-wrapper-rpath=(\S+)', output) if match and is_disabled(match.group(1)): variants += '~wrapperrpath' if re.search(r'--disable-fortran', output): variants += '~fortran' match = re.search(r'--with-slurm=(\S+)', output) if match and is_enabled(match.group(1)): variants += '+slurm' if re.search(r'--enable-libxml2', output): variants += '+libxml2' elif re.search(r'--disable-libxml2', output): variants += '~libxml2' if re.search(r'--with-thread-package=argobots', output): variants += '+argobots' if re.search(r'--with-pmi=no', output): variants += ' pmi=off' elif re.search(r'--with-pmi=simple', output): variants += ' pmi=pmi' elif re.search(r'--with-pmi=pmi2/simple', output): variants += ' pmi=pmi2' elif re.search(r'--with-pmix', output): variants += ' pmi=pmix' match = re.search(r'MPICH Device:\s+(ch3|ch4)', output) if match: variants += ' device=' + match.group(1) match = re.search(r'--with-device=ch.\S+(ucx|ofi|mxm|tcp)', output) if match: variants += ' netmod=' + match.group(1) match = re.search(r'MPICH CC:\s+(\S+)', output) compiler_spec = get_spack_compiler_spec( os.path.dirname(match.group(1))) if compiler_spec: variants += '%' + str(compiler_spec) results.append(variants) return results def setup_build_environment(self, env): env.unset('F90') env.unset('F90FLAGS') # https://bugzilla.redhat.com/show_bug.cgi?id=1795817 if self.spec.satisfies('%gcc@10:'): env.set('FFLAGS', '-fallow-argument-mismatch') # Same fix but for macOS - avoids issue #17934 if self.spec.satisfies('%apple-clang@11:'): env.set('FFLAGS', '-fallow-argument-mismatch') if self.spec.satisfies('%clang@11:'): env.set('FFLAGS', '-fallow-argument-mismatch') def setup_run_environment(self, env): # Because MPI implementations provide compilers, they have to add to # their run environments the code to make the compilers available. # For Cray MPIs, the regular compiler wrappers *are* the MPI wrappers. # Cray MPIs always have cray in the module name, e.g. "cray-mpich" external_modules = self.spec.external_modules if external_modules and 'cray' in external_modules[0]: # This is intended to support external MPICH instances registered # by Spack on Cray machines prior to a879c87; users defining an # external MPICH entry for Cray should generally refer to the # "cray-mpich" package env.set('MPICC', spack_cc) env.set('MPICXX', spack_cxx) env.set('MPIF77', spack_fc) env.set('MPIF90', spack_fc) else: env.set('MPICC', join_path(self.prefix.bin, 'mpicc')) env.set('MPICXX', join_path(self.prefix.bin, 'mpic++')) env.set('MPIF77', join_path(self.prefix.bin, 'mpif77')) env.set('MPIF90', join_path(self.prefix.bin, 'mpif90')) def setup_dependent_build_environment(self, env, dependent_spec): self.setup_run_environment(env) env.set('MPICH_CC', spack_cc) env.set('MPICH_CXX', spack_cxx) env.set('MPICH_F77', spack_f77) env.set('MPICH_F90', spack_fc) env.set('MPICH_FC', spack_fc) def setup_dependent_package(self, module, dependent_spec): spec = self.spec # For Cray MPIs, the regular compiler wrappers *are* the MPI wrappers. # Cray MPIs always have cray in the module name, e.g. "cray-mpich" external_modules = spec.external_modules if external_modules and 'cray' in external_modules[0]: spec.mpicc = spack_cc spec.mpicxx = spack_cxx spec.mpifc = spack_fc spec.mpif77 = spack_f77 else: spec.mpicc = join_path(self.prefix.bin, 'mpicc') spec.mpicxx = join_path(self.prefix.bin, 'mpic++') if '+fortran' in spec: spec.mpifc = join_path(self.prefix.bin, 'mpif90') spec.mpif77 = join_path(self.prefix.bin, 'mpif77') spec.mpicxx_shared_libs = [ join_path(self.prefix.lib, 'libmpicxx.{0}'.format(dso_suffix)), join_path(self.prefix.lib, 'libmpi.{0}'.format(dso_suffix)) ] def autoreconf(self, spec, prefix): """Not needed usually, configure should be already there""" # If configure exists nothing needs to be done if (os.path.exists(self.configure_abs_path) and not spec.satisfies('@3.3:3.3.99 +hwloc')): return # Else bootstrap with autotools bash = which('bash') bash('./autogen.sh') @run_before('autoreconf') def die_without_fortran(self): # Until we can pass variants such as +fortran through virtual # dependencies depends_on('mpi'), require Fortran compiler to # avoid delayed build errors in dependents. # The user can work around this by disabling Fortran explicitly # with ~fortran f77 = self.compiler.f77 fc = self.compiler.fc fortran_missing = f77 is None or fc is None if '+fortran' in self.spec and fortran_missing: raise InstallError( 'mpich +fortran requires Fortran compilers. Configure ' 'Fortran compiler or disable Fortran support with ~fortran' ) def configure_args(self): spec = self.spec config_args = [ '--disable-silent-rules', '--enable-shared', '--with-hwloc-prefix={0}'.format( spec['hwloc'].prefix if '^hwloc' in spec else 'embedded'), '--with-pm={0}'.format('hydra' if '+hydra' in spec else 'no'), '--{0}-romio'.format('enable' if '+romio' in spec else 'disable'), '--{0}-ibverbs'.format('with' if '+verbs' in spec else 'without'), '--enable-wrapper-rpath={0}'.format('no' if '~wrapperrpath' in spec else 'yes') ] if '~fortran' in spec: config_args.append('--disable-fortran') if '+slurm' in spec: config_args.append('--with-slurm=yes') config_args.append('--with-slurm-include={0}'.format( spec['slurm'].prefix.include)) config_args.append('--with-slurm-lib={0}'.format( spec['slurm'].prefix.lib)) else: config_args.append('--with-slurm=no') if 'pmi=off' in spec: config_args.append('--with-pmi=no') elif 'pmi=pmi' in spec: config_args.append('--with-pmi=simple') elif 'pmi=pmi2' in spec: config_args.append('--with-pmi=pmi2/simple') elif 'pmi=pmix' in spec: config_args.append('--with-pmix={0}'.format(spec['pmix'].prefix)) # setup device configuration device_config = '' if 'device=ch4' in spec: device_config = '--with-device=ch4:' elif 'device=ch3' in spec: device_config = '--with-device=ch3:nemesis:' if 'netmod=ucx' in spec: device_config += 'ucx' elif 'netmod=ofi' in spec: device_config += 'ofi' elif 'netmod=mxm' in spec: device_config += 'mxm' elif 'netmod=tcp' in spec: device_config += 'tcp' config_args.append(device_config) # Specify libfabric or ucx path explicitly, otherwise # configure might fall back to an embedded version. if 'netmod=ofi' in spec: config_args.append('--with-libfabric={0}'.format( spec['libfabric'].prefix)) if 'netmod=ucx' in spec: config_args.append('--with-ucx={0}'.format( spec['ucx'].prefix)) # In other cases the argument is redundant. if '@:3.2+hydra' in spec or '@3.3:' in spec: # The root configure script passes the argument to the configure # scripts of all instances of hwloc (there are three copies of it: # for hydra, for hydra2, and for MPICH itself). config_args += self.enable_or_disable('libxml2') # If +argobots specified, add argobots option if '+argobots' in spec: config_args.append('--with-thread-package=argobots') config_args.append('--with-argobots=' + spec['argobots'].prefix) return config_args