# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack.package import * class Parallelio(CMakePackage): """The Parallel IO libraries (PIO) are high-level parallel I/O C and Fortran libraries for applications that need to do netCDF I/O from large numbers of processors on a HPC system.""" homepage = "https://ncar.github.io/ParallelIO/" url = "https://github.com/NCAR/ParallelIO/archive/pio2_5_8.tar.gz" git = "https://github.com/NCAR/ParallelIO.git" maintainers("jedwards4b") license("Apache-2.0") version("2.6.2", sha256="c318894f0230197458917e932ec66301b4407a744df481e9c6a6d9d85f7e5ab1") version("2.6.1", sha256="83d3108d2b9db8219aa6b6ee333cfc12b2a588bcfc781587df5f8b24a716a6eb") version("2.6.0", sha256="e56a980c71c7f57f396a88beae08f1670d4adf59be6411cd573fe85868ef98c0") version("2.5.10", sha256="fac694827c81434a7766976711ba7179940e361e8ed0c189c7b397fd44d401de") version("2.5.9", sha256="e5dbc153d8637111de3a51a9655660bf15367d55842de78240dcfc024380553d") version("2.5.8", sha256="f2584fb4310ff7da39d51efbe3f334efd0ac53ae2995e5fc157decccc0570a89") version("2.5.7", sha256="af8af04e41af17f98f2c90b996ef0d8bcd980377e0b35e57b38938c7fdc87cbd") version("2.5.4", sha256="e51dc71683da808a714deddc1a80c2650ce847110383e42f1710f3ba567e7a65") version("2.5.3", sha256="205a0a128fd5262700efc230b3380dc5ab10e74bc5d273ae05db76c9d95487ca") version("2.5.2", sha256="935bc120ef3bf4fe09fb8bfdf788d05fb201a125d7346bf6b09e27ac3b5f345c") variant("pnetcdf", default=False, description="enable pnetcdf") variant("timing", default=False, description="enable GPTL timing") variant("ncint", default=False, description="enable netcdf integration", when="@2.6.0:") variant("shared", default=True, description="build shared libraries") variant("logging", default=False, description="enable verbose logging") variant( "fortran", default=True, description="enable fortran interface (requires netcdf fortran)" ) variant("mpi", default=True, description="Use mpi to build, otherwise use mpi-serial") # This patch addresses building pio2.6.1 with serial netcdf, the issue is netcdf filters patch("serial261.patch", when="@2.6.1") patch("remove_redefinition_of_mpi_offset.patch", when="@:2.5.6") # This patch addresses an issue when compiling pio2.6.0 with a serial netcdf library. # netcdf4 filters are only available with the parallel build of netcdf. patch("pio_260.patch", when="@2.6.0") depends_on("cmake@3.7:", type="build") depends_on("mpi", when="+mpi") depends_on("mpi-serial", when="~mpi") depends_on("netcdf-c +mpi", type="link", when="+mpi") depends_on("netcdf-c ~mpi", type="link", when="~mpi") depends_on("netcdf-fortran", type="link", when="+fortran") depends_on("parallel-netcdf", type="link", when="+pnetcdf") resource(name="genf90", git="https://github.com/PARALLELIO/genf90.git", tag="genf90_200608") resource( name="CMake_Fortran_utils", git="https://github.com/CESM-Development/CMake_Fortran_utils.git", tag="CMake_Fortran_utils_150308", ) # Allow argument mismatch in gfortran versions > 10 for mpi library compatibility patch("gfortran.patch", when="@:2.5.8 +fortran %gcc@10:") def cmake_args(self): define = self.define define_from_variant = self.define_from_variant spec = self.spec src = self.stage.source_path args = [ define("NetCDF_C_PATH", spec["netcdf-c"].prefix), define("NetCDF_Fortran_PATH", spec["netcdf-fortran"].prefix), define("USER_CMAKE_MODULE_PATH", join_path(src, "CMake_Fortran_utils")), define("GENF90_PATH", join_path(src, "genf90")), define_from_variant("BUILD_SHARED_LIBS", "shared"), define("PIO_ENABLE_EXAMPLES", False), ] if spec.satisfies("+ncint"): args.extend([define("PIO_ENABLE_NETCDF_INTEGRATION", True)]) if spec.satisfies("+pnetcdf"): args.extend([define("PnetCDF_C_PATH", spec["parallel-netcdf"].prefix)]) if spec.satisfies("+fortran"): args.extend([define("NetCDF_Fortran_PATH", spec["netcdf-fortran"].prefix)]) if spec.satisfies("+mpi"): env["CC"] = spec["mpi"].mpicc env["FC"] = spec["mpi"].mpifc else: env["FFLAGS"] = "-DNO_MPIMOD" args.extend( [ define("PIO_USE_MPISERIAL", True), define("PIO_ENABLE_TESTS", False), define("MPISERIAL_PATH", spec["mpi-serial"].prefix), ] ) args.extend( [ define_from_variant("PIO_ENABLE_TIMING", "timing"), define_from_variant("PIO_ENABLE_LOGGING", "logging"), define_from_variant("PIO_ENABLE_FORTRAN", "fortran"), ] ) return args def url_for_version(self, version): return "https://github.com/NCAR/ParallelIO/archive/pio{0}.tar.gz".format( version.underscored ) def setup_run_environment(self, env): env.set("PIO_VERSION_MAJOR", "2") valid_values = "netcdf" if self.spec.satisfies("+mpi"): valid_values += ",netcdf4p,netcdf4c" if self.spec.satisfies("+pnetcdf"): valid_values += ",pnetcdf" env.set("PIO_TYPENAME_VALID_VALUES", valid_values)