# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class Preseq(MakefilePackage):
    """The preseq package is aimed at predicting and estimating the complexity
    of a genomic sequencing library, equivalent to predicting and
    estimating the number of redundant reads from a given sequencing depth
    and how many will be expected from additional sequencing using an
    initial sequencing experiment."""

    homepage = "https://github.com/smithlabcode/preseq"
    url = "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2"

    license("GPL-3.0-only")

    version("2.0.3", sha256="747ddd4227515a96a45fcff0709f26130386bff3458c829c7bc1f3306b4f3d91")
    version("2.0.2", sha256="1d7ea249bf4e5826e09697256643e6a2473bc302cd455f31d4eb34c23c10b97c")

    depends_on("samtools")
    depends_on("gsl")

    def setup_build_environment(self, env):
        env.set("PREFIX", self.prefix)