# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class PyWub(PythonPackage):
    """Bioinformatics tools and a software library developed by the Oxford
    Nanopore Technologies Applications group.
    """

    homepage = "https://github.com/nanoporetech/wub"
    url = "https://github.com/nanoporetech/wub/archive/v0.4.0.tar.gz"

    license("MPL-2.0")

    version("0.4.0", sha256="1526aa392bccac71b872211c45f5b403ad3d55f5762e0ed34ff9086bc1dab6fd")

    depends_on("py-six", type=("build", "run"))
    depends_on("py-pytest", type=("build", "run"))
    depends_on("py-pycmd", type=("build", "run"))
    depends_on("py-biopython", type=("build", "run"))
    depends_on("py-numpy", type=("build", "run"))
    depends_on("py-matplotlib", type=("build", "run"))
    depends_on("py-seaborn", type=("build", "run"))
    depends_on("py-editdistance", type=("build", "run"))
    depends_on("py-pandas@0.20.2:", type=("build", "run"))
    depends_on("py-pysam", type=("build", "run"))
    depends_on("py-tqdm", type=("build", "run"))
    depends_on("py-statsmodels", type=("build", "run"))
    depends_on("py-setuptools", type="build")