# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RAltcdfenvs(RPackage):
    """alternative CDF environments (aka probeset mappings).

    Convenience data structures and functions to handle cdfenvs."""

    bioc = "altcdfenvs"

    version("2.62.0", commit="aedf0e9f98639d60b327e50957e504cf24b64bbb")
    version("2.60.0", commit="0bc0b4493b8e9fe2eb47fb8e9377123ce8f472bb")
    version("2.58.0", commit="08255a777ffa1e1414d3dd3062d95bfdd3dfd47c")
    version("2.56.0", commit="941e00b97a33662a8230991e387070324b2e76bf")
    version("2.52.0", commit="21329abf82eae26f84b7c0270e81c8e089c548ce")
    version("2.46.0", commit="90a11e748a5af98cabfd6670a5b7b256420d172b")
    version("2.44.0", commit="d804f6432422bd532abab415710f890b36cc8133")
    version("2.42.0", commit="00ec6461877a063d938494b8ed0cd273a3b20b85")
    version("2.40.0", commit="517a208f49f168bdd3cde40ed216282c417237d7")
    version("2.38.0", commit="2e92b9da76dbe50af4bf33c525134e29e9809291")

    depends_on("r@2.7:", type=("build", "run"))
    depends_on("r-biocgenerics@0.1.0:", type=("build", "run"))
    depends_on("r-s4vectors@0.9.25:", type=("build", "run"))
    depends_on("r-biobase@2.15.1:", type=("build", "run"))
    depends_on("r-affy", type=("build", "run"))
    depends_on("r-makecdfenv", type=("build", "run"))
    depends_on("r-biostrings", type=("build", "run"))
    depends_on("r-hypergraph", type=("build", "run"))