# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RAnaquin(RPackage):
    """Statistical analysis of sequins.

       The project is intended to support the use of sequins (synthetic
       sequencing spike-in controls) owned and made available by the Garvan
       Institute of Medical Research. The goal is to provide a standard open
       source library for quantitative analysis, modelling and visualization of
       spike-in controls."""

    homepage = "https://bioconductor.org/packages/Anaquin"
    git      = "https://git.bioconductor.org/packages/Anaquin.git"

    version('2.8.0', commit='f591d420740b77881ae0a4c16b208c63d460c601')
    version('2.6.1', commit='22b6c71697fe1e2db8f6d18f77728d0fd96fa6d6')
    version('2.4.0', commit='0d6ae80ff622151a782e4774ca274f06024a71d2')
    version('2.2.0', commit='739f4ed2b73c43f934fd65a993ecb48242a5d5da')
    version('1.2.0', commit='584d1970cc9dc1d354f9a6d7c1306bd7e8567119')

    depends_on('r@3.3:', type=('build', 'run'))
    depends_on('r-ggplot2@2.2.0:', type=('build', 'run'))
    depends_on('r-rocr', type=('build', 'run'))
    depends_on('r-knitr', type=('build', 'run'))
    depends_on('r-qvalue', type=('build', 'run'))
    depends_on('r-locfit', type=('build', 'run'))
    depends_on('r-plyr', type=('build', 'run'))
    depends_on('r-deseq2', type=('build', 'run'))