# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RDecipher(RPackage):
    """Tools for curating, analyzing, and manipulating biological sequences.

    A toolset for deciphering and managing biological sequences."""

    bioc = "DECIPHER"

    version("2.28.0", commit="9be570c9fd812139d6bf9cd0851821fe54d4d3fa")
    version("2.26.0", commit="7de99ec5e79f1f645f29dfbe24d2a106c2b0e69a")
    version("2.24.0", commit="437e60005ab281bd836f47756a367795bc16755d")
    version("2.22.0", commit="45da5cab5869d83af797aa82b08ebcd24f5bdab3")
    version("2.18.1", commit="6a708421550e6705d05e2fb50a0f5ab4f9041cb0")
    version("2.12.0", commit="658ae23870383b25b96a03a18d4ecac228a2650f")
    version("2.10.2", commit="db7b017c9050a7ec1d4daa15352994890095e9c3")
    version("2.8.1", commit="35aa66f48e06b93a98d1060c90c44d34ce05ccd9")
    version("2.6.0", commit="ed9acaa35c8774cb0ea01cd7cc2e46d063d8c70e")
    version("2.4.0", commit="1a57b8e4c7d7dec1c233f79c9a88d3705e0ad432")

    depends_on("r@3.3.0:", type=("build", "run"))
    depends_on("r@3.5.0:", type=("build", "run"), when="@2.18.1:")
    depends_on("r-biostrings@2.35.12:", type=("build", "run"))
    depends_on("r-biostrings@2.59.1:", type=("build", "run"), when="@2.22.0:")
    depends_on("r-rsqlite@1.1:", type=("build", "run"))
    depends_on("r-dbi", type=("build", "run"))
    depends_on("r-s4vectors", type=("build", "run"))
    depends_on("r-iranges", type=("build", "run"))
    depends_on("r-xvector", type=("build", "run"))