# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack import *


class RFdbInfiniummethylationHg18(RPackage):
    """Annotation package for Illumina Infinium DNA methylation probes

    Compiled HumanMethylation27 and HumanMethylation450 annotations"""

    # This is a bioconductor package but there is no available git repository
    homepage = "https://bioconductor.org/packages/release/data/annotation/html/FDb.InfiniumMethylation.hg18.html"
    url      = "http://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg18_2.2.0.tar.gz"

    version('2.2.0', sha256='4a9028ac03c11fffbab731ea750bc7f9b0884fc43c6a8dac6eb2c644e4c79f6f')

    depends_on('r@2.10:', type=('build', 'run'))
    depends_on('r-genomicfeatures@1.7.22:', type=('build', 'run'))
    depends_on('r-txdb-hsapiens-ucsc-hg18-knowngene', type=('build', 'run'))
    depends_on('r-org-hs-eg-db', type=('build', 'run'))
    depends_on('r-annotationdbi', type=('build', 'run'))
    depends_on('r-biostrings', type=('build', 'run'))