# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RGenie3(RPackage):
    """GEne Network Inference with Ensemble of trees.

    This package implements the GENIE3 algorithm for inferring gene
    regulatory networks from expression data."""

    bioc = "GENIE3"

    version("1.22.0", commit="e0b7f23a1ac5b01c937a351bb530b2dc6b76711f")
    version("1.20.0", commit="aea2e686a262f30b16c068241938d04f21251a0d")
    version("1.18.0", commit="f16b25ef50978a4a497eb2f911e21f2e839fa33c")
    version("1.16.0", commit="5543b1b883d3a1c92e955de6668444278edc2bdf")
    version("1.12.0", commit="14289cee9bed113ab35ba03bcaac4a30e5784497")
    version("1.6.0", commit="d6a49182e098342afe77f01c322dfc7b72450502")
    version("1.4.3", commit="ae719c759f23f09d28fcf1acc45b860cd7761f08")
    version("1.2.1", commit="1b56fe8184d521d1bb247f000efe9e2b540604c9")
    version("1.0.0", commit="eb7c95ed12ea50d61e8fa20bc2b25ae9d74c302f")

    depends_on("r-reshape2", type=("build", "run"))
    depends_on("r-dplyr", type=("build", "run"), when="@1.16.0:")