# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)

from spack.package import *


class RGseabase(RPackage):
    """Gene set enrichment data structures and methods.

    This package provides classes and methods to support Gene Set Enrichment
    Analysis (GSEA)."""

    bioc = "GSEABase"

    version("1.62.0", commit="fc20cbcd85da0202eb0f2316dcf63f6fb1372b3e")
    version("1.60.0", commit="aae4e52b50b076550967601f98031e952fb97765")
    version("1.58.0", commit="7de04442fb1ab63ffde29f4e3daf13ad32e90bdb")
    version("1.56.0", commit="ee7c3ca4ad0f1f3e9b9162db1515413802860ecc")
    version("1.52.1", commit="257dfccbc5b507d82099fac6b06bb03825e995e8")
    version("1.46.0", commit="edce83a9256a0c03206c2bce7c90ada0d90f6622")
    version("1.44.0", commit="7042ff64a98b05b9572231ee1b4f3ae4fc9c768e")
    version("1.42.0", commit="5e40ce0fdd4dc0cff7601b169bbf6aa1430ae33e")
    version("1.40.1", commit="3e5441708b80aab2c9642988bee709d5732831a6")
    version("1.38.2", commit="84c9f10c316163118ca990900a7a67555b96e75b")

    depends_on("r@2.6.0:", type=("build", "run"))
    depends_on("r-biocgenerics@0.13.8:", type=("build", "run"))
    depends_on("r-biobase@2.17.8:", type=("build", "run"))
    depends_on("r-annotate@1.45.3:", type=("build", "run"))
    depends_on("r-graph@1.37.2:", type=("build", "run"))
    depends_on("r-annotationdbi", type=("build", "run"))
    depends_on("r-xml", type=("build", "run"))