##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class RRhtslib(RPackage):
    """This package provides version 1.1 of the 'HTSlib' C library
    for high-throughput sequence analysis. The package is primarily
    useful to developers of other R packages who wish to make use
    of HTSlib. Motivation and instructions for use of this package
    are in the vignette, vignette(package="Rhtslib", "Rhtslib")."""

    homepage = "https://www.bioconductor.org/packages/Rhtslib/"
    url      = "https://git.bioconductor.org/packages/Rhtslib"

    version('1.8.0', git='https://git.bioconductor.org/packages/Rhtslib', commit='3b5493473bed42958614091c58c739932ffcfa79')

    depends_on('r@3.4.0:3.4.9', when='@1.8.0')
    depends_on('r-zlibbioc', type=('build', 'run'))
    depends_on('autoconf@2.67:', type='build')